DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and PP5.2

DIOPT Version :9

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001031534.1 Gene:PP5.2 / 818881 AraportID:AT2G42810 Length:538 Species:Arabidopsis thaliana


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470
MPP_RdgC 184..494 CDD:277364
EFh 616..681 CDD:238008
PP5.2NP_001031534.1 TPR_11 12..77 CDD:290150
TPR 13..46 CDD:197478
TPR repeat 13..41 CDD:276809
TPR_17 35..68 CDD:290167
TPR repeat 46..76 CDD:276809
TPR_16 53..115 CDD:290168
TPR_1 81..114 CDD:278916
TPR repeat 81..109 CDD:276809
MPP_PP5_C 216..531 CDD:277362
PP2Ac 244..520 CDD:197547
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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