Protein Alignment rdgC and ppef1

DIOPT Version :10

• Sequence 1: NP_536738.3
• Gene: rdgC / 40224
• FlyBaseID: FBgn0265959
• Length: 746
• Species: Drosophila melanogaster
• Sequence 2: XP_021335306.1
• Gene: ppef1 / 559132
• ZFINID: ZDB-GENE-080303-27
• Length: 729
• Species: Danio rerio
• Alignment Length: 711
• Identity: 271/711 - (38%)
• Similarity: 393/711 - (55%)
• Gaps: 122/711 - (17%)

  Fly    90 TIRAAIFIQKWYRRHQARREMQRRCNWQIFQNLEYASEQDQAELYKFFNDLIKHMPQAAGRKNQY 154
            ||:|||.||:||||:.|..||:||..|.|||::|||.||||.:|..||..::.:..|..|
Zfish    30 TIKAAILIQRWYRRYVAHLEMRRRYTWNIFQSIEYAGEQDQLQLSSFFTFMLDNFTQING----- 89

  Fly   155 QGSAHVSVLDDK--DDLVEEFGDI-----------VNAKIELPIRKNHIDLLIDVFRKKRGNRLH 206
            .|...:|.|.|.  |.|.||...:           ...::..|:.....:.|:..|::::  .||
Zfish    90 NGPDLISHLLDSVVDPLTEEVRQLKYEQIMVPESYSGPRLSFPLSVTDTNALLSAFKEEQ--TLH 152

  Fly   207 PKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNG 271
            .|||..:|.|..|.|||:||:..:||:.::::|:||||||:|||||::.:||||||:.|||:|||
Zfish   153 GKYVLQLLYETKKFLKQMPNVIYLSTSYAKEITICGDLHGRLDDLLLIFYKNGLPSAENPYIFNG 217

  Fly   272 DFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFID 336
            |||||||:..|::::|.:..|.:|:.:.||||||||.:||.||||.|||..||..:.:.||..:.
Zfish   218 DFVDRGKKSTEIIIILFAFVLLYPDHMHLNRGNHEDHIMNLRYGFTREVMQKYKTHGREILQLLQ 282

  Fly   337 EVYRWLPLGSVLNSRVLIVHGGFSDSTSLDLIKSIDRGKYVSIL--------------------- 380
            :|:..||:.:|::::|||||||.||.|.||.:.:::|.|..|.|
Zfish   283 DVFSLLPVATVIDNKVLIVHGGISDKTDLDFLSTVERHKVKSALRLPKRSTDHLTVRSCSRSSSR 347

  Fly   381 -----------------------------------------------------RPPLTDGE---- 388
                                                                 |||.:..:
Zfish   348 NRGRNSRSSSRHSSRSRRKKLSKQGSRSSSSSSSSSSSSSMCSPRVSAKNTPRRPPPSPTDMLQV 412

  Fly   389 --------------PLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLS 439
                          |.::.||||:.||:||||:...||.||:.||.|.:||||||...||:|.|.
Zfish   413 PFLDSFVSLEPPELPREELEWQQVVDILWSDPKHQNGCSPNSFRGGGCYFGPDVTQTLLQKHGLC 477

  Fly   440 YVIRSHECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQTKRLS 504
            .:|||||||..|:|..|:.::||||||||||..|||:|||::|..:|:|.|.|| ..:..|::|:
Zfish   478 LLIRSHECKQEGYELCHNGQVITIFSASNYYEEGSNRGAYVKLGPELVPRFFQY-QVSRSTRKLT 541

  Fly   505 FKQRMGIVESSALKELAVRMRDHRDELEDEFRKYDPKDSGYISISHWCKVMENVTKLGLPWRLLR 569
            ..||:.:.|.|||:.|..::..||.||...|::||..::|.||.|.|.:|:|:|.:|.||||.||
Zfish   542 LHQRVRVAEGSALRALKEKLYAHRSELMAAFQQYDINNTGRISTSEWAQVVESVLRLDLPWRTLR 606

  Fly   570 DKLAP-GTDSQKVNYNRTLDLLDTDVILEAEADGMSVMDALYANKASLVAIFNIIDADNSGEITL 633
            .:||. |||. .|.|....:.:.....:......::  :.||..:..|..||||||.|:||:|::
Zfish   607 PRLARLGTDG-NVEYESCFEDISPGEPIPPVTPNLA--ETLYRYRTDLEIIFNIIDKDHSGQISI 668

  Fly   634 DEFETAIDLLVAHMPGAYSKAEMLEKCRMMDLNGDGKVDLNEFLEAFRLSDLHR---KEQQ 691
            :||.....|..:|:..|.:...:.:..|.:|.|.||.:|..|||||||:  :|:   ||||
Zfish   669 EEFRQTWKLFSSHLGVAVNDQTIDDMARSIDFNKDGSIDFTEFLEAFRV--VHKLDVKEQQ 727

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rdgC	NP_536738.3	IQ	89..111	CDD:197470	13/20 (65%)
		MPP_RdgC	184..494	CDD:277364	156/401 (39%)
		FRQ1	527..681	CDD:444056	58/154 (38%)
		EFh	616..681	CDD:238008	27/64 (42%)
ppef1	XP_021335306.1	IQ	32..54	CDD:197470	13/21 (62%)
		MPP_RdgC	132..532	CDD:277364	157/402 (39%)
		FRQ1	564..716	CDD:444056	58/154 (38%)