DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and flw

DIOPT Version :9

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_727418.1 Gene:flw / 44289 FlyBaseID:FBgn0000711 Length:461 Species:Drosophila melanogaster


Alignment Length:396 Identity:111/396 - (28%)
Similarity:176/396 - (44%) Gaps:75/396 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GSAHVSVLDDKDDLVEE--------------------FGDIVNA--------KIELPIRKNHIDL 192
            ||:|    |..|||.|:                    .||.:..        |..|.:|    |.
  Fly    87 GSSH----DPLDDLTEQQRRLLQQYSISPPSETMISADGDQITVHHPREEPKKSRLKLR----DF 143

  Fly   193 LIDVFRK-----KRGNRLHPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLL 252
            .:..|.:     |:......:...|.|:.....|:|     |:...:...:.:|||:||:..|||
  Fly   144 FVAEFVRSCRTGKQVQMTEAEVRGLCLKSREIFLQQ-----PILLELEAPLIICGDIHGQYTDLL 203

  Fly   253 VVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFI 317
            .:....|.|.::| |:|.||:|||||:.||.:.|||:..:.:|...||.|||||.:.:|..|||.
  Fly   204 RLFEYGGFPPAAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFY 267

  Fly   318 REVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFS-DSTSLDLIKSIDRGKYVSILR 381
            .|.:.:|  |.|....|.| .:..||:.::::.::...|||.| |...::.|:.:.|        
  Fly   268 DECKRRY--NVKLWKTFTD-CFNCLPVAAIIDEKIFCCHGGLSPDLQGMEQIRRLMR-------- 321

  Fly   382 PPLTDGEPLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSHE 446
                   |.|..:...:.|::||||...:.......||....||.||...||.||.|..:.|:|:
  Fly   322 -------PTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGVDVVSKFLNRHELDLICRAHQ 379

  Fly   447 CKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHF---------VQYISAASQTKR 502
            ...:|:||....:::|:|||.||.....|.|..:.:::.||..|         .:|:.:...:.|
  Fly   380 VVEDGYEFFARRQLVTLFSAPNYCGEFDNAGGMMTVDDTLMCSFQILKPSEKKAKYLYSGMNSSR 444

  Fly   503 LSFKQR 508
            .:..||
  Fly   445 PTTPQR 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470
MPP_RdgC 184..494 CDD:277364 95/324 (29%)
EFh 616..681 CDD:238008
flwNP_727418.1 MPP_PP1_PPKL 149..428 CDD:277359 92/302 (30%)
PP2Ac 160..430 CDD:197547 91/293 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438800
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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