DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and ppp1caa

DIOPT Version :9

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_999976.1 Gene:ppp1caa / 407980 ZFINID:ZDB-GENE-040516-3 Length:331 Species:Danio rerio


Alignment Length:325 Identity:103/325 - (31%)
Similarity:167/325 - (51%) Gaps:31/325 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 KNHIDLLIDVFRKKRGNRLHP-KYVALI---LREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGK 247
            |.:||.:|....:.:|:|  | |.|.|.   :|......:::....|:...:...:.:|||:||:
Zfish     6 KLNIDSIIQRLLEVKGSR--PGKNVQLTESEIRGLCLKSREIFLSQPILLELEAPLKICGDVHGQ 68

  Fly   248 LDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNA 312
            ..|||.:....|.|..|| |:|.||:|||||:.||.:.|||:..:.:|...||.|||||.:.:|.
Zfish    69 YYDLLRLFEYGGFPPESN-YLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINR 132

  Fly   313 RYGFIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFS-DSTSLDLIKSIDRGKY 376
            .|||..|.:.:|  |.|....|.| .:..||:.::::.::...|||.| |..|::.::.:.|   
Zfish   133 IYGFYDECKRRY--NIKLWKTFTD-CFNCLPVAAIVDEKIFCCHGGLSPDLQSMEQVRRVMR--- 191

  Fly   377 VSILRPPLTDGEPLDKTEWQQIFDIMWSDP-QATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSY 440
                        |.|..:...:.|::|:|| :..:|...|. ||....||.||...||.:|.:..
Zfish   192 ------------PTDVPDQGLLCDLLWADPDKDVLGWGEND-RGVSFTFGADVVAKFLHKHDMDL 243

  Fly   441 VIRSHECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQTKRLSF 505
            :.|:|:...:|:||....:::|:|||.||.....|.||.:.::..||..| |.:..|.  |:|.:
Zfish   244 ICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSF-QILKPAD--KKLYY 305

  Fly   506  505
            Zfish   306  305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470
MPP_RdgC 184..494 CDD:277364 100/312 (32%)
EFh 616..681 CDD:238008
ppp1caaNP_999976.1 MPP_PP1_PPKL 8..298 CDD:277359 99/312 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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