DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and ppp1cc

DIOPT Version :9

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_998835.1 Gene:ppp1cc / 407879 XenbaseID:XB-GENE-967934 Length:323 Species:Xenopus tropicalis


Alignment Length:326 Identity:105/326 - (32%)
Similarity:164/326 - (50%) Gaps:35/326 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 IRKNHIDLLIDVFRKKRGNR------LHPKYV-ALILREAAKSLKQLPNISPVSTAVSQQVTVCG 242
            :.|.:||.:|....:.||::      |....: .|.|:.....|.|     |:...:...:.:||
 Frog     4 VDKLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQ-----PILLELEAPLKICG 63

  Fly   243 DLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHED 307
            |:||:..|||.:....|.|..|| |:|.||:|||||:.||.:.|||:..:.:|...||.|||||.
 Frog    64 DIHGQYYDLLRLFEYGGFPPESN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 127

  Fly   308 SVMNARYGFIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFS-DSTSLDLIKSI 371
            :.:|..|||..|.:.:|  |.|....|.| .:..||:.::::.::...|||.| |..|::.|:.|
 Frog   128 ASINRIYGFYDECKRRY--NIKLWKTFTD-CFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRI 189

  Fly   372 DRGKYVSILRPPLTDGEPLDKTEWQQIFDIMWSDP-QATMGCVPNTLRGAGVWFGPDVTDNFLQR 435
            .|               |.|..:...:.|::|||| :..:|...|. ||....||.:|...||.:
 Frog   190 MR---------------PTDVPDQGLLCDLLWSDPDKDVLGWGEND-RGVSFTFGAEVVAKFLHK 238

  Fly   436 HRLSYVIRSHECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQT 500
            |.|..:.|:|:...:|:||....:::|:|||.||.....|.||.:.::..||..| |.:..|.:.
 Frog   239 HDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSF-QILKPAEKK 302

  Fly   501 K 501
            |
 Frog   303 K 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470
MPP_RdgC 184..494 CDD:277364 103/317 (32%)
EFh 616..681 CDD:238008
ppp1ccNP_998835.1 MPP_PP1_PPKL 8..298 CDD:277359 102/315 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..323 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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