DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and Ppef1

DIOPT Version :9

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:XP_011246120.1 Gene:Ppef1 / 237178 MGIID:1097157 Length:676 Species:Mus musculus


Alignment Length:638 Identity:260/638 - (40%)
Similarity:385/638 - (60%) Gaps:48/638 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 IRAAIFIQKWYRRHQARREMQRRCNWQIFQNLEYASEQDQAELYKFFNDLIKHMPQAAGRKNQ-- 153
            |:||:.||.||||::||..:::.....|||::||:.||.|.:|..||:.::::..:.....:.  
Mouse    43 IKAALVIQNWYRRYRARLRVRQHYALAIFQSIEYSDEQGQMQLSSFFSFMLENYTKTNNEDSALV 107

  Fly   154 ---YQGSAHVSVLDDKDD---LVEEFGDIVNAKIELPIRKNHIDLLIDVFRKKRGNRLHPKYVAL 212
               :..:...|.:.|:||   |:|........:::.|:....|.:|:..|::::  .||..||..
Mouse   108 TRIFDNTRRESQIKDRDDFLGLIEVPDSYDGPRLQFPLTFTDIHILLQAFKQQQ--ILHAHYVLE 170

  Fly   213 ILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRG 277
            :|.||.|.|||:||.|.|.|..::::|:|||||||||||:::.:||||||.:|||||||||||||
Mouse   171 VLFEARKVLKQMPNFSHVKTFPAKEITICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRG 235

  Fly   278 KRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDEVYRWL 342
            ...:|:|::||..:|.:|:.:.||||||||.:||.||||.:|:..||..:.::||..::|||.||
Mouse   236 NNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGRKILQVLEEVYTWL 300

  Fly   343 PLGSVLNSRVLIVHGGFSDSTSLDLIKSIDRGKYVSILRPPL----------------------- 384
            |:|:::::.:|::|||.|:||.|:.:..:.|.|..|:|.||:                       
Mouse   301 PIGTIIDNEILVIHGGISESTDLNTLHQLQRNKMKSVLMPPVLGNQETGEKRNKSASNYVEPRKV 365

  Fly   385 ----TDGEPLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSH 445
                |..|.|.|.||:||.||:||||:...||.|||.||.|.:||||||...|.:::|..:||||
Mouse   366 EPDKTPSEDLTKQEWEQIVDILWSDPRGKKGCYPNTSRGGGCYFGPDVTSKVLSKNQLKMLIRSH 430

  Fly   446 ECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQTKRLS-FKQRM 509
            ||||:|:|..||.|:||:|||||||..|||:||||||:...||.|.||  ..:.|..|: ..|||
Mouse   431 ECKPDGYEVSHDGKVITVFSASNYYEEGSNRGAYIRLSYGTMPQFFQY--QVTSTSCLNPLHQRM 493

  Fly   510 GIVESSALKELAVRMRDHRDELEDEFRKYDPKDSGYISISHWCKVMENVTKLGLPWRLLRDKLAP 574
            ..:||||.|.|..:|...:.:|.:.|...|...||.||::.|...|||:..|.||||.|...|..
Mouse   494 NAMESSAFKILKEKMISRKTDLINAFELRDHSRSGRISLAEWAFSMENILGLNLPWRSLSSHLVT 558

  Fly   575 GTDSQKVNYNRTLDLLDTDVILEAEADGM--SVMDALYANKASLVAIFNIIDADNSGEITLDEFE 637
            ...|..|:|..:.|    |:.:|.....|  ::.:.:|..::.|..||||||:|.||.|::|||.
Mouse   559 IDSSGSVDYMSSFD----DIRIEKPTKDMKSNLTETMYRYRSDLKIIFNIIDSDQSGLISMDEFR 619

  Fly   638 TAIDLLVAHMPGAYSKAEMLEKCRMMDLNGDGKVDLNEFLEAFRLSDLHRKEQ 690
            |...|..||.......:::.|...::|.|.||.:|.||||:||.:  :|:.::
Mouse   620 TMWKLFNAHYKAHIDDSQIDELASIVDFNKDGNIDFNEFLKAFYV--VHKYDK 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470 11/19 (58%)
MPP_RdgC 184..494 CDD:277364 162/336 (48%)
EFh 616..681 CDD:238008 29/64 (45%)
Ppef1XP_011246120.1 MPP_RdgC 144..479 CDD:277364 163/338 (48%)
PTZ00183 518..660 CDD:185503 52/145 (36%)
EF-hand_7 595..663 CDD:372618 29/67 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831308
Domainoid 1 1.000 256 1.000 Domainoid score I2024
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 493 1.000 Inparanoid score I1385
Isobase 1 0.950 - 0 Normalized mean entropy S3051
OMA 1 1.010 - - QHG59402
OrthoDB 1 1.010 - - D215218at33208
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 1 1.000 - - oto94847
orthoMCL 1 0.900 - - OOG6_105509
Panther 1 1.100 - - O PTHR45668
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3052
SonicParanoid 1 1.000 - - X2939
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.890

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