DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and pph-1

DIOPT Version :10

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001369937.1 Gene:pph-1 / 182242 WormBaseID:WBGene00004083 Length:349 Species:Caenorhabditis elegans


Alignment Length:393 Identity:109/393 - (27%)
Similarity:183/393 - (46%) Gaps:55/393 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 RKNQYQGSAHVSVLDDKDDLVEEFGDIVNAKIELPIRKNHIDLLIDVFRKKRGNRLHPKYVALIL 214
            |||.......:::    |.|:.....:......|.:.:|.|                 :.|.::.
 Worm     4 RKNSSSSFGELNI----DQLISTLVSVKPWHKTLDVTENEI-----------------RMVCVLA 47

  Fly   215 REAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKR 279
            |:.......|..:.|       .:.:.||:||:..|||.:.:..|.|..|| |:|.||:||||.:
 Worm    48 RQIFMHQPMLLELEP-------PLKIGGDIHGQFADLLRLFNLAGYPPESN-YLFLGDYVDRGPK 104

  Fly   280 GLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDEVYRWLPL 344
            .:|.::|||...:.:||..||.|||||.:.:|..|||..|.:.:|   ..::.....:|:..:|:
 Worm   105 SIETIVLLLCYKIKYPNNFFLLRGNHEVANLNRIYGFYDECKRRY---SVKLWKCFQDVFNCMPV 166

  Fly   345 GSVLNSRVLIVHGGFSDS-TSLDLIKSIDRGKYVSILRPPLTDGEPLDKTEWQQIFDIMWSDPQA 408
            .:::::::...|||.|.: .|||.:|.:.|               |.|..|...:.|::||||.|
 Worm   167 AALIDNKIFCCHGGLSPNLRSLDQLKRLSR---------------PCDVQETGLLCDVLWSDPDA 216

  Fly   409 T-MGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSHECKPNGHEFMHDNKIITIFSASNYYAI 472
            | :|..||. ||....||.||...|||:..|..|:|.|:...:|:||.....::|:|||.||...
 Worm   217 TVVGWAPNE-RGVSYVFGVDVLAQFLQKMDLDIVVRGHQVVEDGYEFFGRRGLVTVFSAPNYCGE 280

  Fly   473 GSNKGAYIRLNNQLMPHFVQYISAASQ---TKRLSFKQRMGIVESSALKELAVRMRDHRDELEDE 534
            ..|.||.:.::..|:..| |.:...||   ...|:.||...:...:.:..:.:..:. :..::..
 Worm   281 FDNAGAVMNVDENLLCSF-QILKPQSQLVMDAALAEKQNNFVANLAGMANIKIEQKP-QPMIQKR 343

  Fly   535 FRK 537
            ||:
 Worm   344 FRR 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470
MPP_RdgC 184..494 CDD:277364 96/311 (31%)
FRQ1 527..681 CDD:444056 2/11 (18%)
EFh 616..681 CDD:238008
pph-1NP_001369937.1 MPP_superfamily 15..303 CDD:472684 99/336 (29%)
Blue background indicates that the domain is not in the aligned region.

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