DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdgC and pph-5

DIOPT Version :10

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001367002.1 Gene:pph-5 / 180263 WormBaseID:WBGene00012665 Length:496 Species:Caenorhabditis elegans


Alignment Length:500 Identity:154/500 - (30%)
Similarity:249/500 - (49%) Gaps:65/500 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 DDGKRRSSSVED-ASSCRSSEIERVGASMQTLGPNGQPQSSAAQTSTRASSLLQLFQRRGWCKHF 75
            :|.|.::..::| |:.....::..|.|.:.::.....|  :|.....||.:.|            
 Worm    23 EDEKEKAGMIKDEANQFFKDQVYDVAADLYSVAIEIHP--TAVLYGNRAQAYL------------ 73

  Fly    76 RKPLRGMSASRAEKTIRAAI---FIQKWYRRHQARREMQR-RCNWQIFQNLEYASEQDQAELYKF 136
            :|.|.|.:...|:..|  ||   :::.:|||..|...:.| :.....:|.:......|:....| 
 Worm    74 KKELYGSALEDADNAI--AIDPSYVKGFYRRATANMALGRFKKALTDYQAVVKVCPNDKDARAK- 135

  Fly   137 FNDLIKHMPQAAGRKNQYQGSAHVSVLDDKDDLVEEFGDIVNA----------KIELPIRKNHID 191
            |::..|.:     |:.:::  |.:|...||..:.|...  :||          ::|..|.|..:.
 Worm   136 FDECSKIV-----RRQKFE--AAISTDHDKKTVAETLD--INAMAIEDSYDGPRLEDKITKEFVL 191

  Fly   192 LLIDVFRKKRGNRLHPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLH 256
            .||..|:.::  :||.||...:|.|....:|.||.:..::....::.|:|||:||:..||..:..
 Worm   192 QLIKTFKNQQ--KLHKKYAFKMLLEFYNYVKSLPTMVEITVPTGKKFTICGDVHGQFYDLCNIFE 254

  Fly   257 KNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVE 321
            .||.||.:|||:|||||||||...:|.:..::...|.:||..|::|||||..|||..|||..||:
 Worm   255 INGYPSETNPYLFNGDFVDRGSFSVETIFTMIGFKLLYPNHFFMSRGNHESDVMNKMYGFEGEVK 319

  Fly   322 SKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGF--SDSTSLDLIKSIDRGKYVSILRPPL 384
            :||.   :::.....|.:.||||..::|.::.:.|||.  .|..:|:.|:..||.      |.|.
 Worm   320 AKYT---QQMCDMFTETFCWLPLCHLINEKIFVCHGGLFKEDGVTLEDIRKTDRN------RQPP 375

  Fly   385 TDGEPLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSHECKP 449
            .:|         .:.|::|||||...|..|:. ||.|..||||||..:.:.:.:.||:||||.||
 Worm   376 DEG---------IMCDLLWSDPQPINGRSPSK-RGVGCQFGPDVTSKWCETNGIEYVVRSHEVKP 430

  Fly   450 NGHEFMHDNKIITIFSASNYYAIGSNKGAYIRL-NNQLMPHFVQY 493
            .|:|..|:.:..|:|||.||....:||||:|.: .:.|.|.|..:
 Worm   431 EGYEMHHNGQCFTVFSAPNYCDQMNNKGAFITITGDNLTPRFTPF 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470 7/24 (29%)
MPP_RdgC 184..494 CDD:277364 117/312 (38%)
FRQ1 527..681 CDD:444056
EFh 616..681 CDD:238008
pph-5NP_001367002.1 PLN03088 29..>139 CDD:215568 25/126 (20%)
TPR repeat 33..57 CDD:276809 4/23 (17%)
TPR repeat 62..91 CDD:276809 9/42 (21%)
TPR repeat 96..124 CDD:276809 6/27 (22%)
MPP_PP5_C 176..490 CDD:277362 118/320 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.