DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and C23G10.1

DIOPT Version :10

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001367544.1 Gene:C23G10.1 / 175880 WormBaseID:WBGene00016010 Length:454 Species:Caenorhabditis elegans


Alignment Length:513 Identity:130/513 - (25%)
Similarity:224/513 - (43%) Gaps:118/513 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 QTLGPNGQPQSSAAQ-----TSTRASSLLQLFQRRGWCKHFRKPLRGMSASRAEKTIRAAIFIQK 99
            :|:.|:..|..:..|     ||...:.:||:.:|..:..||:...                  ||
 Worm    16 KTVYPDPIPMPTCPQLINDGTSCFLNIILQMLKRANFHDHFKGDW------------------QK 62

  Fly   100 WYRRHQARREMQRRCNWQIFQNLEYASEQDQAELYKFF-NDLIKHMPQAAGRKNQYQGSAH---- 159
            ..::....:|:|     |||..  ....:|.:.|.:.| |:.:|..|             |    
 Worm    63 GKQKMLMHKELQ-----QIFNG--KPGPKDVSRLREMFSNEALKDGP-------------HPLLV 107

  Fly   160 -------VSVLDDKDDLVEEFGDIVNAKIELPIRKNHIDLLIDVFRKK--RGNRLHPK-YVALIL 214
                   :|.:.| :|:::|.|    |:.::             |:|:  ..|::..: ::..:|
 Worm   108 ALKCLIKMSAVSD-NDVIKEKG----ARDKM-------------FQKQSDESNKMFAEHFIKTLL 154

  Fly   215 REAAKSL---------------KQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSS 264
              |.|.:               |::..:......:...|.:||||||:..||:.:..:.|.|..|
 Worm   155 --ACKGMTKIRTMDIFRLIHICKKIFTVQKSMVEIDGPVRICGDLHGQYPDLIRLFAQGGFPPDS 217

  Fly   265 NPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHK 329
            | |:|.||:||||...|||:||.|:....:||...:.|||||...:|.:|||..||.::....|.
 Worm   218 N-YLFLGDYVDRGSFNLEVILLCLAYKARYPNNFMMLRGNHEVIHINEKYGFKDEVFNRKGEYHD 281

  Fly   330 RILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDSTSLDLIKSIDRGKYVSILRPPLTDGEPLDKTE 394
            .:....:|:...:||.:::..|:|.:|||.|..     |||:|..:  ::.||..::.|.|:.  
 Worm   282 ELYPEFNEMMDMMPLVALVGGRILCMHGGLSQH-----IKSLDDLR--NLRRPFHSEDECLEN-- 337

  Fly   395 WQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSHECKPNGHEFMHDNK 459
                 |||||||....|...|. |||.|.||.:......:...:..::|.|:...:|:||....|
 Worm   338 -----DIMWSDPAKVSGWTANP-RGASVQFGENEVKEMCKLLDIDLIVRGHQVVQDGYEFFAGKK 396

  Fly   460 IITIFSASNYYAIGSNKGAYIRLNNQLMPHF---------VQYISAASQTKRLSFKQR 508
            ::|:|||.:|....:|..|..:::..|...|         |:.|..::::...|..|:
 Worm   397 LVTVFSAPHYMQSFTNSAAVCKVSAGLEVSFEVLKPEDIRVEEIKCSAESSCASDMQQ 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470 3/21 (14%)
MPP_RdgC 184..494 CDD:277364 96/336 (29%)
FRQ1 527..681 CDD:444056
EFh 616..681 CDD:238008
C23G10.1NP_001367544.1 PP2Ac 162..432 CDD:197547 89/285 (31%)
Blue background indicates that the domain is not in the aligned region.

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