DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdgC and gsp-3

DIOPT Version :10

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_491429.1 Gene:gsp-3 / 172082 WormBaseID:WBGene00021113 Length:305 Species:Caenorhabditis elegans


Alignment Length:271 Identity:88/271 - (32%)
Similarity:137/271 - (50%) Gaps:21/271 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 VSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAV 298
            |...:.||||:||:..|||.:..|||.|...| ::|.||:||||::.:|.:.|:|...:.:|...
 Worm    53 VEPPIIVCGDIHGQYSDLLRIFDKNGFPPDVN-FLFLGDYVDRGRQNIETICLMLCFKIKYPENF 116

  Fly   299 FLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDS- 362
            |:.|||||...:|..|||..|...:|  ...|:.:...:.:.|:||..::.||:|.:|||.|.. 
 Worm   117 FMLRGNHECPAINRVYGFYEECNRRY--KSTRLWSIFQDTFNWMPLCGLIGSRILCMHGGLSPHL 179

  Fly   363 TSLDLIKSIDRGKYVSILRPPLTDGEPLDKTEWQQIFDIMWSDP-QATMGCVPNTLRGAGVWFGP 426
            .:||.::.:.|               |.|........|::|:|| |...|...|| ||....||.
 Worm   180 QTLDQLRQLPR---------------PQDPPNPSIGIDLLWADPDQWVKGWQANT-RGVSYVFGQ 228

  Fly   427 DVTDNFLQRHRLSYVIRSHECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFV 491
            ||..:...|..:..|.|:|:...:|:||....|::|||||.:|.....|..|.::::..::..||
 Worm   229 DVVADVCSRLDIDLVARAHQVVQDGYEFFASKKMVTIFSAPHYCGQFDNSAATMKVDENMVCTFV 293

  Fly   492 QYISAASQTKR 502
            .|.......:|
 Worm   294 MYKPTPKSMRR 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470
MPP_RdgC 184..494 CDD:277364 86/261 (33%)
FRQ1 527..681 CDD:444056
EFh 616..681 CDD:238008
gsp-3NP_491429.1 MPP_superfamily 6..297 CDD:472684 87/262 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.