DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and ppef2b

DIOPT Version :9

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:XP_003200844.5 Gene:ppef2b / 100537436 ZFINID:ZDB-GENE-160512-1 Length:509 Species:Danio rerio


Alignment Length:478 Identity:181/478 - (37%)
Similarity:255/478 - (53%) Gaps:103/478 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 RGMSASRAEKTIRAAIFIQKWYRRHQARREMQRRCNWQIFQNLEYASEQDQAELYKFFNDLIKHM 144
            ||..:..|...:|||:.||:|||::.||.||:|||.|.|||::||:.:||..:||.||:.|::|.
Zfish    18 RGSISVPAATAMRAALLIQRWYRQYVARLEMRRRCTWNIFQSIEYSGQQDHIKLYNFFSFLMEHF 82

  Fly   145 PQAAGRKNQYQGSAHVSVLDDKDDLVEEFGDIVNAKIELPIRKN----HIDL------------- 192
            .::.|          |.|......:.:.||:....:.| |..|:    ||.|             
Zfish    83 GRSEG----------VCVSPPASLVSQMFGERSVCQDE-PWEKHCCYTHIQLPDGYSGPHLTFPL 136

  Fly   193 -------LIDVFRKKRGNRLHPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDD 250
                   |:..||.|:  :||.:||..:|.:....|:.:||||.|||....::|:||||||.|:|
Zfish   137 TLSGVTELLHAFRNKQ--KLHARYVLQLLGKTWTLLRLMPNISTVSTGTHTEITICGDLHGHLED 199

  Fly   251 LLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYG 315
            ||::.:|||.||:..|||||||:|||||..:||||:|.:..|.:|:.:.||||||||.::|.|||
Zfish   200 LLLIFYKNGFPSAETPYVFNGDYVDRGKESMEVLLVLFAFLLLYPHDMHLNRGNHEDHIVNLRYG 264

  Fly   316 FIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDSTSLDLIKSIDRGKYVSIL 380
            |.:||.|||..:.|.||..:.:::..|||.:::|.:|||||||.||.|.|::|..:.|.::||.|
Zfish   265 FTKEVLSKYRVHGKLILELLQKIFSRLPLATIINQKVLIVHGGISDQTDLNVISKLQRHRFVSAL 329

  Fly   381 RP------------------------PLTDGEPL------------------------------- 390
            ||                        .||...||                               
Zfish   330 RPLRRRDWPPDPEPDEDSSVYRRRVQSLTHCSPLRRHTPTHTARHSLHAGTGRCVEEELRERRRL 394

  Fly   391 -----------DKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRS 444
                       |..||:||.||:||||.|..|||||.:|..|..:|||||...|.:|:|..:|||
Zfish   395 AEDPELQHTHTDADEWKQIVDILWSDPMAQNGCVPNKVRSGGCLWGPDVTHAVLDKHQLQMLIRS 459

  Fly   445 HECKPNGHEFMHDNKIITIFSAS 467
            ||||..|:||.|..::...::.|
Zfish   460 HECKQEGYEFCHSGRVTERYTHS 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470 11/21 (52%)
MPP_RdgC 184..494 CDD:277364 143/374 (38%)
EFh 616..681 CDD:238008
ppef2bXP_003200844.5 MPP_superfamily 135..475 CDD:326311 137/341 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D215218at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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