DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Clc and cnot2

DIOPT Version :9

Sequence 1:NP_001163480.1 Gene:Clc / 40221 FlyBaseID:FBgn0024814 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_001106600.1 Gene:cnot2 / 100127821 XenbaseID:XB-GENE-991720 Length:522 Species:Xenopus tropicalis


Alignment Length:60 Identity:15/60 - (25%)
Similarity:25/60 - (41%) Gaps:14/60 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 DWLRQIGESISKTKLASRNAEKQAATLENGTIEPGT-------EWERIAKLCDFNPKVNK 193
            ||.....|.:..|:     |.....|::..|.|.||       .|.::||  :|:.:.:|
 Frog   450 DWRYHKEERVWITR-----APGMEPTMKTNTYERGTYYFFDCLNWRKVAK--EFHLEYDK 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClcNP_001163480.1 Clathrin_lg_ch 6..212 CDD:279433 15/60 (25%)
cnot2NP_001106600.1 NOT2_3_5 378..501 CDD:367845 14/57 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165173421
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.