DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and FLD

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_001326314.1 Gene:FLD / 820202 AraportID:AT3G10390 Length:936 Species:Arabidopsis thaliana


Alignment Length:845 Identity:270/845 - (31%)
Similarity:389/845 - (46%) Gaps:205/845 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MTEPIEYVTLISDDSDGEPTP---------KRNVNHPPSALSA--PNPGQKQKHPDEDSNDAPAT 66
            |..|..||..:|......|.|         :.::|..|:::|.  .||..:|.    .|..||  
plant     1 MNPPDNYVPSVSHSQFSTPPPPQSSSNTNTETSLNPFPNSISTSISNPSFEQM----VSFSAP-- 59

  Fly    67 SDERRTSRRNRPKVDYSNRP-------SGSGDTASNDKSGSASMGPNNQQAERRSQSQTRKSEAN 124
             .:||..|..|.....::.|       .|:.:..|   |.::|.|..|.:....| :||.||.  
plant    60 -KKRRRGRSQRSMSSLNSLPVPNVGLLPGNSNFVS---SSASSSGRFNVEVVNGS-NQTVKSY-- 117

  Fly   125 ATSSSVSGPSAGNSRPSQNGDSKDRDAGTPTVLSGQEGAVFQSRLPFNKMTPNEEACFPDISRSG 189
                    |..|:...:.|     ::|.|..:|:...|      .|.:.:| .||..|..:...|
plant   118 --------PGIGDEIITIN-----KEATTEALLALTAG------FPADSLT-EEEIEFGVVPIVG 162

  Fly   190 ILGHRVFLNIRNSLLHMWVDNPKIQLSFEIALKNLPPPFDSEPSLVRRVHSFLERHGFINFGIFK 254
            .:....::.|||.::..|.:|....::.|:.|.::|....   ||:...:::|..||:|||||.:
plant   163 GIEQVNYILIRNHIISKWRENISSWVTKEMFLNSIPKHCS---SLLDSAYNYLVTHGYINFGIAQ 224

  Fly   255 RLK---PIPAKKLGKVIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVGGRISTFRKNS----YI 312
            .:|   |..:.| ..||::|||:||||.|.||.:||..|.|||.|.|.|||:.|.:..:    ..
plant   225 AIKDKFPAQSSK-SSVIIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAA 288

  Fly   313 ADVGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLESASY 377
            ||:|..|:||..|||:.|:::|:|..|..::..||||..|||||..:.|..:|..||:||:.||.
plant   289 ADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDIKVEVAFNQLLDKASK 353

  Fly   378 LSHRLDFNYAGD--CPVSLGDALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDT 440
            |...:     ||  ..||||.|||                                    |.|..
plant   354 LRQLM-----GDVSMDVSLGAALE------------------------------------TFRQV 377

  Fly   441 IGKLKNEHLAMINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAKLHELE 505
            .|                                             :|:..||..         
plant   378 SG---------------------------------------------NDVATEEMG--------- 388

  Fly   506 QNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVA 570
                           :.:||.||||:|||..::.|||..|||||.::..|.|..:..|...:..|
plant   389 ---------------LFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQA 438

  Fly   571 LTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQS 635
            |.||:.|.....|:.|:||:.||:|.|.|       ..|:.|:|:||:.|||||          :
plant   439 LAENVPILYEKTVQTIRYGSNGVKVTAGN-------QVYEGDMVLCTVPLGVLK----------N 486

  Fly   636 NTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWS--- 697
            .::||.|.||..|...|||||||.||||.:.|..:||..:.:.|||:......|||.|||:|   
plant   487 GSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAP 551

  Fly   698 ISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIF--GNTSVPQPKETVVTRWRSDPWARG 760
            ::...:|:|||||.||:..|::.....:.|.:.:|:.|:  ...:||.|.:||.|||..||::.|
plant   552 VAGGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLG 616

  Fly   761 SYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRIA 825
            |||.|:||:||.|||:||..|         |..|||||||.|.|.||||:|||:::|||||..:|
plant   617 SYSNVAVGASGDDYDILAESV---------GDGRLFFAGEATTRRYPATMHGAFVTGLREAANMA 672

  Fly   826  825
            plant   673  672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311 20/84 (24%)
NAD_binding_8 269..327 CDD:290186 29/61 (48%)
Amino_oxidase 274..824 CDD:279874 198/560 (35%)
FLDNP_001326314.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 338 1.000 Domainoid score I244
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 371 1.000 Inparanoid score I562
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1034142at2759
OrthoFinder 1 1.000 - - FOG0001117
OrthoInspector 1 1.000 - - otm2542
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10742
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2101
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.930

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