DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Su(var)3-3 and PAO2

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_181830.1 Gene:PAO2 / 818904 AraportID:AT2G43020 Length:490 Species:Arabidopsis thaliana


Alignment Length:589 Identity:170/589 - (28%)
Similarity:252/589 - (42%) Gaps:150/589 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 FGIFKRLKPIPAKKLGKVIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVGGRISTFRKNSYIAD 314
            |...:|:|    .:...|||||.|..|::.|..||.....|:|||:|||:|||:.|.....:..|
plant    17 FSAGERMK----TRSPSVIVIGGGFGGISAARTLQDASFQVMVLESRDRIGGRVHTDYSFGFPVD 77

  Fly   315 VGAMVVTGV-YGNPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLESASYL 378
            :||..:.|| ..||:..:..::|:         |||...|                   :::...
plant    78 LGASWLHGVCKENPLAPVIGRLGL---------PLYRTSG-------------------DNSVLY 114

  Fly   379 SHRLDFNYAGDCPVSLGDALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGK 443
            .|.|: :||             :..|...||       .||:: ||..:..:|     :.:.|.|
plant   115 DHDLE-SYA-------------LFDMDGNQV-------PQELV-TQIGVTFER-----ILEEINK 152

  Fly   444 LKNEHLAMINQRKPKGTDGDLKYCYQEFNI---RNTQIKMEETISTFHDLHAEEKQMLAKLHELE 505
            :::|.            |.|:... |.|:|   |..::::|                     .|.
plant   153 VRDEQ------------DADISIS-QAFSIVFSRKPELRLE---------------------GLA 183

  Fly   506 QNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFI--GHHTTVRNGYSCVP 568
            .|             :|.|:...:|...|.....:|.|.|||:   |.:  ||...|| ||..|.
plant   184 HN-------------VLQWYVCRMEGWFAADAETISAKCWDQE---ELLPGGHGLMVR-GYRPVI 231

  Fly   569 VALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQ 633
            ..|.:.|||||...|.:|.....||:|..||      ..|:.||..|..:.|||||         
plant   232 NTLAKGLDIRVGHRVTKIVRRYNGVKVTTEN------GQTFVADAAVIAVPLGVLK--------- 281

  Fly   634 QSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSI 698
             |.|:||:|.||:|||:||..||.|..||::|.|:::|| |.....|.|..|:............
plant   282 -SGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFW-PKVEFLGVVAETSYGCSYFLNLHKA 344

  Fly   699 SSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYS 763
            :..|||:.:.||..|..:|.::|:......:..|:.|..: ::| |.:.:|:||.||..:.||||
plant   345 TGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPD-ALP-PVQYLVSRWGSDVNSMGSYS 407

  Fly   764 YVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAG----RI 824
            |..||.....|:.|..||           ..||||||.|..::|.:|||||.:||..|.    |:
plant   408 YDIVGKPHDLYERLRVPV-----------DNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRV 461

  Fly   825 ADYY 828
            .:.|
plant   462 LERY 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311 170/589 (29%)
NAD_binding_8 269..327 CDD:290186 24/58 (41%)
Amino_oxidase 274..824 CDD:279874 159/559 (28%)
PAO2NP_181830.1 PLN02268 41..462 CDD:177909 159/556 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1034142at2759
OrthoFinder 1 1.000 - - FOG0001117
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10742
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

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