DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and 4930438A08Rik

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_001361634.1 Gene:4930438A08Rik / 73988 MGIID:1921238 Length:536 Species:Mus musculus


Alignment Length:626 Identity:139/626 - (22%)
Similarity:230/626 - (36%) Gaps:207/626 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 FKRLKPIPAKKLG------KVIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVGGRISTFR---K 308
            ::.|..:....||      :|:|||||::||..|..||..|..|.||||..||||||.|.|   .
Mouse    44 YEELLQLARNGLGQTAERKQVVVIGAGMAGLTAAKILQDAGHQVTVLEASGRVGGRIETHRVPGA 108

  Fly   309 NSYIADVGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLE 373
            :.|| ::|||.:.         ::.::..:|:                  :|..::.:||     
Mouse   109 HWYI-ELGAMRIP---------INHRLSHELI------------------KKFGLMLKEF----- 140

  Fly   374 SASYLSHRLDFNYAGDCPVSLGDALEWIISMQEMQVMHKRGQHMQ-------------EIIATQT 425
                            ||.   :...|::    :..:.:|...:|             |:..|..
Mouse   141 ----------------CPC---NNQTWVL----VNGVRQRSGAVQADPGLLGYSVRADEVGKTAE 182

  Fly   426 KIIEQRRRLKTLRDTIGKLKNEHLAMINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDL 490
            ::.:     .:||..:.:|||.....:.::            |..|:.:...||:       .:|
Mouse   183 QLFD-----ASLRKIVEELKNSSCQEVLEK------------YDSFSTKEYLIKV-------GNL 223

  Fly   491 HAEEKQMLAKLHELEQNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDF-EFI 554
            .....||:..:    .|..|..|.:               |....|    .:..:.||..| |.:
Mouse   224 SRGAVQMIGDM----LNTDSGYYEA---------------FTETLR----GIISFFQDPRFDEIV 265

  Fly   555 GHHTTVRNGYSCVPVALTENL---DIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVC 616
            |       |:..:|.||..:|   .:...|..:|::.....|.|..........:....||.||.
Mouse   266 G-------GFDQLPQALHNSLLPGTVWFYSPAEEVEMSGDCVHVTYRTPDPLLPRARLTADFVVV 323

  Fly   617 TLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGH 681
            ..|            ::.:..::|.|||...||.|::.:.:.:..||:|...:.||:.: .:|. 
Mouse   324 ATT------------AKAARLLRFQPPLSLNKQDALRSVHYNSATKVILACTQRFWERD-GIFS- 374

  Fly   682 VGSTTASRGEMFLFWSISSSP----VLLA----------LVAGMAANLVESVTDDI--IIGRCMS 730
             |.::..|...|:::.....|    |:||          ..|.....:|:.|.||:  :..|...
Mouse   375 -GKSSTDRPSRFIYYPNHIFPNGAGVILASYTLDDDSVFFTALDHTQVVDIVLDDLAALHSRAKE 438

  Fly   731 VLKNIFGNTSVPQPKETVVTRWRSDPWARGS------YSYVSVGSSGSDYDLLAAPVIPPSSKDA 789
            .|:.:     .|.   :.:..|..||::.|.      |.||       ||   |..:..|     
Mouse   439 ELRAL-----CPY---SAIKNWSQDPYSMGGFAFFTPYQYV-------DY---AQELSQP----- 480

  Fly   790 EGLPRLFFAGEHTIRNYPATVHG----AYLSGLREAGRIAD 826
            |||  :|||||||  :.|   ||    |..||||.|..|.:
Mouse   481 EGL--VFFAGEHT--DLP---HGWIDTAIKSGLRVAKNIQE 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311
NAD_binding_8 269..327 CDD:290186 29/60 (48%)
Amino_oxidase 274..824 CDD:279874 129/595 (22%)
4930438A08RikNP_001361634.1 PRK12779 <42..>98 CDD:183740 22/53 (42%)
Amino_oxidase 71..512 CDD:366721 129/595 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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