DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and kdm1a

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_001229924.1 Gene:kdm1a / 558450 ZFINID:ZDB-GENE-030131-7828 Length:833 Species:Danio rerio


Alignment Length:825 Identity:434/825 - (52%)
Similarity:570/825 - (69%) Gaps:85/825 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SDDSDGEPTPKRNVNHPPSALSAPNPGQKQKHPDEDSNDAPATSDERRTSRRNRPKVDYSNRPSG 88
            |.:..|.|.|     ||      |.||    ..|:||      ::.||||||.|.||:|...   
Zfish    54 SGEPGGPPLP-----HP------PGPG----GIDQDS------AEGRRTSRRKRAKVEYREM--- 94

  Fly    89 SGDTASNDKSGSASMGPNNQQAERRSQSQTRKSEANATSSSVSGPSAGNSRPSQNGDSKDRDAGT 153
                   |:| .|::..:...:|     :.|.::|......|..|.|   .|.:  :..|.:...
Zfish    95 -------DES-LANLSEDEYYSE-----EERNAKAEKERKQVIPPPA---PPIE--EENDSEPEE 141

  Fly   154 PTVLSGQEGAVFQSRLPFNKMTPNEEACFPDISRSGILGHRVFLNIRNSLLHMWVDNPKIQLSFE 218
            |:.::|.|||.||||||.::||..|.||||||........:|||.|||..|.:|:||||:||:||
Zfish   142 PSGINGVEGAAFQSRLPHDRMTSQEAACFPDIINGPQHTQKVFLYIRNRTLQLWLDNPKVQLTFE 206

  Fly   219 IALKNLPPPFDSEPSLVRRVHSFLERHGFINFGIFKRLKPIPAKKLGKVIVIGAGISGLAVAHQL 283
            ..::.|..|::|:..||.|:||:|||||||||||:||:||:|.||.|||||||||:||||.|.||
Zfish   207 ATVQQLEAPYNSDAVLVHRIHSYLERHGFINFGIYKRVKPLPTKKTGKVIVIGAGVSGLAAARQL 271

  Fly   284 QQFGMDVIVLEARDRVGGRISTFRKNSYIADVGAMVVTGVYGNPMTILSKQIGMDLVPIQQTCPL 348
            |.|||||.|||:|||||||::||||.:|:||:|||||||:.||||.::|||:.|:|..|:|.|||
Zfish   272 QSFGMDVTVLESRDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPL 336

  Fly   349 YGPDGK------PVPKEKDDVIEREFNRLLESASYLSHRLDFNYAGDCPVSLGDALEWIISMQEM 407
            |..:|:      .||||||:::|:|||||||:.|||||:||||:..:.|||||.|||.:|.:||.
Zfish   337 YEANGQAGERCTSVPKEKDEMVEQEFNRLLEATSYLSHQLDFNFLNNKPVSLGQALEVVIQLQEK 401

  Fly   408 QVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLAMINQRKP---------KGTDGD 463
            .|..::.:|.::|:.||.::.:...::.|.::.:.:|..::......:.|         |....|
Zfish   402 HVKDEQIEHWKKIVKTQEELKDLLNKMVTTKEKVKELHQQYKEASEVKPPRDITAEFLVKSKHRD 466

  Fly   464 LKYCYQEFN-IRNTQIKMEETISTFHDLHAEEKQMLAKLHELEQNRPSDVYLSSRDRLILDWHFA 527
            |....:|:: :...|:|:||                 :|.|||.|.|||||||||||.|||||||
Zfish   467 LTALCKEYDELVEMQVKLEE-----------------RLQELEANPPSDVYLSSRDRQILDWHFA 514

  Fly   528 NLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKG 592
            ||||||||.|:.||||||||||||||.|.|.|||||||||||||.|.|||::|:||::::|.:.|
Zfish   515 NLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTSSG 579

  Fly   593 VEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGF 657
            .||:|.|.:::.....||.|.|:|||.|||:|        ||...|:|.||||:||..||:|:||
Zfish   580 CEVIAVNTRSTTQTFIYKCDAVLCTLPLGVMK--------QQPPAVQFVPPLPEWKTAAIQRMGF 636

  Fly   658 GNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISSSPVLLALVAGMAANLVESVTDD 722
            ||||||||||||:||||:.|||||||||||||||:||||::..:|:||||:||.||.::|:::||
Zfish   637 GNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALMAGEAAGIMENISDD 701

  Fly   723 IIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIP-PSS 786
            :|:|||:::||.|||:::|||||||||:|||:|||||||||||:.||||:||||:|.|:.| |:.
Zfish   702 VIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPAI 766

  Fly   787 KDA-EGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRIADYYLG 830
            ..| :.:|||||||||||||||||||||.||||||||||||.:||
Zfish   767 PGASQPVPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311 46/84 (55%)
NAD_binding_8 269..327 CDD:290186 43/57 (75%)
Amino_oxidase 274..824 CDD:279874 324/567 (57%)
kdm1aNP_001229924.1 SWIRM 151..238 CDD:282311 47/86 (55%)
NAD_binding_8 257..315 CDD:290186 43/57 (75%)
Amino_oxidase 262..805 CDD:279874 324/567 (57%)
SKA2 371..>441 CDD:302619 26/69 (38%)
Prefoldin 393..494 CDD:298833 24/117 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594418
Domainoid 1 1.000 664 1.000 Domainoid score I145
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32240
Inparanoid 1 1.050 831 1.000 Inparanoid score I440
OMA 1 1.010 - - QHG52579
OrthoDB 1 1.010 - - D1034142at2759
OrthoFinder 1 1.000 - - FOG0001117
OrthoInspector 1 1.000 - - oto38759
orthoMCL 1 0.900 - - OOG6_103427
Panther 1 1.100 - - LDO PTHR10742
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2622
SonicParanoid 1 1.000 - - X2101
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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