DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and Ppox

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_651278.2 Gene:Ppox / 42939 FlyBaseID:FBgn0020018 Length:475 Species:Drosophila melanogaster


Alignment Length:489 Identity:104/489 - (21%)
Similarity:175/489 - (35%) Gaps:185/489 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 VIGAGISGLAVAHQ-LQQFGMDVIVLEARDRVGGRI-STFRKN-SYIADVGAMVVTGVYGNP--M 328
            |:|.|:|||:..:. |::||..:.:.||..||||.: |..||: ::|.:.|...:..| |.|  .
  Fly     5 VLGGGLSGLSAGYYLLRRFGKPLTIYEASPRVGGWVRSENRKDRNFIFESGPRTIRPV-GEPGAN 68

  Fly   329 TI-LSKQIGMDLVPIQ---------------QTC-------PLYG---PDGKPV----------- 356
            |: |.:.:.:::.||:               |.|       .|:|   |..||:           
  Fly    69 TLELVEDLKLEVTPIRRSHVAARNRMLYAKGQLCMLPNSPKGLFGVLPPFTKPLYKAVLRDLFTA 133

  Fly   357 ---PKEKDDVI----EREFNRLLESASY-LSHRLDFNYAGDCPVSLGDALEWIISMQ-EMQVMHK 412
               .|.:|:.|    ||.|.:  |.|.| :|..:       |.:..|||.|  ||:: .|:.:.:
  Fly   134 SKKAKLEDESIYSFAERRFGK--EIADYAISPMI-------CGICAGDARE--ISVRFLMEGLFE 187

  Fly   413 RGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLAMINQRKPK-------------GTDGDL 464
            :.|....::  :..:|.:..:.||        |:....:..:|:||             |..|.|
  Fly   188 KEQKYGGVL--KGTLISRFEKNKT--------KDTKDGLFAERQPKLYAQAVKEKWAMYGLKGGL 242

  Fly   465 --------KYCYQ---------------------EFNIRNTQIKMEETISTFHDLHAEEKQMLAK 500
                    ||..:                     ..||::.::.:|..:|:.      ....||.
  Fly   243 ENLPKTMRKYLGERDVNVQLSNECRNLTFSSSGVRMNIKDAEVPVEHVVSSL------PAYKLAP 301

  Fly   501 LHELEQNRPSDVYLSSR-------DRLILDWHFAN-----------------------------L 529
            |  ::|..||   ||::       |.|:::..|..                             .
  Fly   302 L--VKQQHPS---LSAQLLSIPYVDVLVVNMQFPGKLLKQDGFGLLVPPVEKLPLLGVIFDSCCF 361

  Fly   530 EFANATRLNNLSLKHW-DQDDDFEFIGHHTTVRNGYSCVPVALTENLDI-------RVNSAVKEI 586
            :....|.|..:...|| ||     :.|...:.:.........:.:.|.|       ||::..|.|
  Fly   362 DMGENTVLTVMMGGHWFDQ-----WFGDRPSPKQILDLATSHVQKMLQIREEPKFSRVHTLHKCI 421

  Fly   587 KYGTKG----VEVVAENLKTSNSQMTYKADLVVC 616
            ...|.|    ||.:...:|      |||..|.||
  Fly   422 PQYTVGHKRRVEAIRNYIK------TYKLPLSVC 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311
NAD_binding_8 269..327 CDD:290186 22/60 (37%)
Amino_oxidase 274..824 CDD:279874 101/484 (21%)
PpoxNP_651278.2 HemY 17..472 CDD:224153 98/477 (21%)
NAD_binding_8 18..76 CDD:290186 19/58 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452788
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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