Protein Alignment Su(var)3-3 and shps

DIOPT Version :10

• Sequence 1: NP_649194.1
• Gene: Su(var)3-3 / 40217
• FlyBaseID: FBgn0260397
• Length: 890
• Species: Drosophila melanogaster
• Sequence 2: NP_651239.1
• Gene: shps / 42892
• FlyBaseID: FBgn0286199
• Length: 477
• Species: Drosophila melanogaster
• Alignment Length: 617
• Identity: 97/617 - (15%)
• Similarity: 181/617 - (29%)
• Gaps: 283/617 - (45%)

  Fly   267 VIVIGAGISGLAVAHQL--QQFGMDVIVLEARDRVGGRISTFRKNSYIADVGAMVVTGVYGNPMT 329
            |:::|.|:||||.|.::  .:..:.|.::||.|.:||.:.   :||
  Fly    14 VLIVGGGLSGLASALKILAMESTLKVRMIEASDALGGLMG---QNS------------------- 56

  Fly   330 ILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLESASYLSHRLDFNYAGDCPVSL 394
                                                   .||:::|
  Fly    57 ---------------------------------------TRLVDAA------------------- 63

  Fly   395 GDALEWIISMQEMQVMHKRGQHMQEIIATQTKI-IEQRRRLKTLRDTIGKLK------------- 445
                                  .|:::|..|.| :..|||    |...|.|:
  Fly    64 ----------------------QQDMLALLTLIHLSPRRR----RSISGSLRRCWDLDRGLTAMP 102

  Fly   446 -----NEHLAMINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAKLHELE 505
                 ..::.|::.|.|       |:..:.||:|.....||:.| ..|...::.:..:..|.:|.
  Fly   103 AKFELGRYIDMLDLRMP-------KFRSKRFNLRERVSNMEQHI-CHHLFFSKSRNFMLNLVQLV 159

  Fly   506 QNRPS-----DVYLSSRD-----RLILDWHF----ANLEFANATRLNNLSLKHWDQDDDFEFIGH 556
            ...|:     ||::|...     ::::|::|    :..|.:....:.|:.       :..:||
  Fly   160 CGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEISTQMLIENIL-------EQLQFI-- 215

  Fly   557 HTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLG 621
                               .|.:|.....:::....|:|..:......:|        ...|.:.
  Fly   216 -------------------KIILNCRAVRLEHFKNYVQVTDDQGNKHTAQ--------AAILAIP 253

  Fly   622 VLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTT 686
            ..||...|          |:|.:|                       ::|.....:..|..|...
  Fly   254 WNKVQKLH----------FEPRIP-----------------------KVFLPRTTSRSGRKGRQV 285

  Fly   687 ASRGEMFL---FWS--------ISSSPVL------LALVAGMAANLVESVTDDIIIGRCMSVLKN 734
            .|:.::..   .|:        :||.|::      ::...|...:|.|.  .|.::...:.:|..
  Fly   286 ISQFQLRYGKSVWTDLGYSGNFLSSQPMVSGHECRMSSFCGYVLHLPED--QDEVLQDVVDLLAE 348

  Fly   735 IFGNTSVPQPKE---------TVVTRWRSDPWARGSYSYVS-VGSSGSDYDLLAAPVIPPSSKDA 789
            .||. .:.||.|         ....:.::.||.|..:|..| ||:|
  Fly   349 HFGE-EMRQPLECQCFTDELNVAQHKPQTKPWHRVIWSSSSAVGTS------------------- 393

  Fly   790 EGLPRLFFAGEHTIRNYPATVHGAYLSGLREA 821
                            |.:.:.||..||.|.|
  Fly   394 ----------------YRSLMGGAVQSGFRAA 409

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Su(var)3-3	NP_649194.1	PLN03000	74..>827	CDD:178578	97/617 (16%)
shps	NP_651239.1	YobN	9..409	CDD:440844	96/615 (16%)