DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and mao

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_997992.2 Gene:mao / 404730 ZFINID:ZDB-GENE-040329-3 Length:522 Species:Danio rerio


Alignment Length:634 Identity:126/634 - (19%)
Similarity:217/634 - (34%) Gaps:171/634 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 VIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVGGRISTFR-KNSYIADVGAMVVTGVYGNPMTI 330
            |||||.|||||:.|..|...|::.:|||||.|||||..|.: |.:...|:|...: |...|.:..
Zfish     8 VIVIGGGISGLSAAKLLVDSGLNPVVLEARSRVGGRTYTVQNKETKWVDLGGAYI-GPTQNRILR 71

  Fly   331 LSKQIGMDLVPIQQ-----------TCPLYGPDGKPVPKEKDDVIEREFNRLLESASYLSHRLDF 384
            ::||.|:....:.:           :.|..|    |.|...:.....::|.|..:..    ::..
Zfish    72 IAKQYGVKTYKVNEEESLVHYVKGKSYPFKG----PFPPMWNPFAYMDYNNLWRTMD----KMGM 128

  Fly   385 NYAGDCPVSLGDALEW-IISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEH 448
            ....:.|.....|.|| .::||::         ..:|..|::     .||..||           
Zfish   129 EIPKEAPWRAPHAEEWDKMTMQQL---------FDKICWTRS-----ARRFATL----------- 168

  Fly   449 LAMINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAKLHELEQNRPSDVY 513
                                    ..|..:..|.     |::.|.                    
Zfish   169 ------------------------FVNVNVTSEP-----HEVSAL-------------------- 184

  Fly   514 LSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENLD-- 576
                      |....::....| :...|..:..|:..|         ..|.:.:...:...|.  
Zfish   185 ----------WFLWYVKQCGGT-MRIFSTTNGGQERKF---------AGGANQISEGMARELGDR 229

  Fly   577 IRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGV-LKVAVAHKESQQSNTVKF 640
            ::::.||..|......|||     :|.|.:: |||..|:..:..|: ||             :.|
Zfish   230 VKLSRAVCSIDQTGDLVEV-----RTVNEEV-YKAKYVILAIPPGLNLK-------------IHF 275

  Fly   641 DPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSI------S 699
            :|.||..:.|.|.|:..|::.|.::.:...||...    |:.||......:..:..::      .
Zfish   276 NPELPPLRNQLIHRVPMGSVIKCMVYYKENFWRKK----GYCGSMVIEEEDAPIGLTLDDTKPDG 336

  Fly   700 SSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSY-S 763
            |.|.::..:....:..:.::|.|....|...:...:.|:.....|.......|..:.::.|.| :
Zfish   337 SVPAIMGFILARKSRKLANLTRDERKRRICEIYARVLGSEEALYPVHYEEKNWCEEEYSGGCYTA 401

  Fly   764 YVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRI---- 824
            |...|.......:|..||           .||:|||..|...:...:.||..:|.|.:..:    
Zfish   402 YFPPGIMTQFGRVLREPV-----------GRLYFAGTETATEWSGYMEGAVQAGERASREVMCAM 455

  Fly   825 -----ADYYLGYPEG--TPPDIGYSVAEAANLVSVGNVVKLRDLSPNLS 866
                 :..:...||.  .|.....:.....||.|||..:|...:|..|:
Zfish   456 GKLHASQIWQSEPESMDVPARPFVTTFWERNLPSVGGFLKFMGVSSFLA 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311
NAD_binding_8 269..327 CDD:290186 26/58 (45%)
Amino_oxidase 274..824 CDD:279874 109/572 (19%)
maoNP_997992.2 NAD_binding_8 10..76 CDD:290186 28/66 (42%)
Amino_oxidase 15..452 CDD:279874 109/573 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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