DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and CG6034

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_649005.1 Gene:CG6034 / 39974 FlyBaseID:FBgn0036750 Length:479 Species:Drosophila melanogaster


Alignment Length:617 Identity:158/617 - (25%)
Similarity:248/617 - (40%) Gaps:203/617 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 KKLGKVIVIGAGISGLAVAHQLQQFGM-DVIVLEARDRVGGRISTFRKNSYIADVGAMVVTGVYG 325
            |:..|:::||||.||:|.|.:|.:.|. :|::.||.||:||||:|....:.:.|:||        
  Fly    14 KETAKIVIIGAGASGVAAATKLLEQGFKNVLLFEAEDRIGGRINTILFANSLIDLGA-------- 70

  Fly   326 NPMTILSKQIGMDLVPIQQTCPLYGPDGKPV-PKEKD-DVIEREFNRLLESASYLSHRLDFNYAG 388
                              |.|  :|.:|..| .|.|| ||::|       :..|:.|.:..|   
  Fly    71 ------------------QWC--HGEEGNVVYEKVKDLDVLDR-------TGDYVVHFIRSN--- 105

  Fly   389 DCPVSLGDALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLAMIN 453
                                         :||:   |.:  ..:.|..|.:.. ::..||     
  Fly   106 -----------------------------KEIL---TDV--HNKALTELTNAF-EVPGEH----- 130

  Fly   454 QRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAK-----------LHELEQN 507
                :|:.||....|.:.||... :..::||       |:|.|...|           |.||...
  Fly   131 ----EGSVGDAFNAYWKENIHQL-VPNDKTI-------AKEAQDCLKKVICSMDACDNLSELSYR 183

  Fly   508 RPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFI------------------ 554
                             :|.|  ||.|....|||   |.|...::|:                  
  Fly   184 -----------------NFRN--FAIAGGDQNLS---WRQKGYWKFLSVLLNSSDNQPGDQGILK 226

  Fly   555 GHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLT 619
            ||                    :.:|..:.:|.:...| |:   .|:..|.|.. .||.|:||::
  Fly   227 GH--------------------VHLNKRIAKINWEGDG-EL---TLRCWNGQFV-SADHVICTVS 266

  Fly   620 LGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPN----ANLFG 680
            ||||:         :.:...|.|.||..|.::|:.|..|.:||..|.|:......|    |.|:.
  Fly   267 LGVLR---------EKHHKLFVPALPASKIRSIEGLKLGTVNKFYLEFEEQPVPENIREMAFLWL 322

  Fly   681 HVGSTTASRGEMF------LFWSISSSPVLL-ALVAGMAANLVESVTDDIIIGRCMSVLKNIFGN 738
            .........|:.|      .|..:...|.|| ..:.|..:..||:::::.::...|.:.:. |..
  Fly   323 EEDLKELRSGKYFWLESVCYFHRVDCQPRLLQGWIIGAHSRYVETISEEQVLEGIMWMFRK-FLK 386

  Fly   739 TSVPQPKETVVTRWRSDPWARGSYSYVS-----VGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFA 798
            .|||.||..:.::|:|:|..||||||.|     :.:..:|   ||:|::     |..|.||:.||
  Fly   387 FSVPYPKNFLRSQWQSNPNFRGSYSYYSTYADELRTGRTD---LASPLV-----DVTGRPRIQFA 443

  Fly   799 GEHTIRNYPATVHGAYLSGLREAGRIADYYLG 830
            ||.:.||:.:|||||..||.|||.|:.::|.|
  Fly   444 GEASSRNHFSTVHGAIESGWREAERLNEFYEG 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311
NAD_binding_8 269..327 CDD:290186 23/58 (40%)
Amino_oxidase 274..824 CDD:279874 149/597 (25%)
CG6034NP_649005.1 Amino_oxidase 33..470 CDD:279874 146/591 (25%)
NAD_binding_8 <35..88 CDD:290186 22/80 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452795
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46708
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10742
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2622
SonicParanoid 00.000 Not matched by this tool.
54.970

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