DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and CG7460

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_001261998.1 Gene:CG7460 / 39973 FlyBaseID:FBgn0036749 Length:486 Species:Drosophila melanogaster


Alignment Length:608 Identity:142/608 - (23%)
Similarity:239/608 - (39%) Gaps:182/608 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 KKLGKVIVIGAGISGLAVAHQLQQFGM-DVIVLEARDRVGGRISTFRKNSYIADVGAMVVTGVYG 325
            ::..:::::|||.:|:|.|.:|...|. :|::|||.||:|||:.|......:.|:||....|..|
  Fly    13 RQTARIVIVGAGSAGIAAATRLLDLGFRNVLLLEAEDRIGGRVHTIPFADNVVDLGAQWCHGEKG 77

  Fly   326 NPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLESASYLSHRLDFNYAGDC 390
            |  .:..|...::|:.:  |.|.|                 |..|.:.|...:           .
  Fly    78 N--VVYDKVKDLNLLEV--TEPHY-----------------ETFRCVRSNKEV-----------L 110

  Fly   391 PVSLGDALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLAMINQR 455
            |..|.|.|:.|..|                     .|.:::..|.....::|...|         
  Fly   111 PDDLADQLKTIADM---------------------SIPDRQAELLDFEGSLGDYIN--------- 145

  Fly   456 KPKGTDGDLKYCYQEFNIRNTQIKM--------EETISTFHDLHAEEKQMLAKLHELEQNRPSDV 512
                    :|| ::|.      .|:        ||.:..||...|..:   |..|..|.:....:
  Fly   146 --------MKY-WKEL------AKLPPIDRTIAEEFLEVFHKFEASVE---AADHLFEVSGKGHL 192

  Fly   513 -YLSSRDRLILDWHFANLEFANATRLNNLSLK-HWDQDDDFEFIGHHTTVRNGYSCVPVALTENL 575
             |......|:|:|.....:     |...|.:| ..||.:|...:..|                  
  Fly   193 EYWLCEGELLLNWKDKGYK-----RFLKLLMKAPEDQSEDLGILKDH------------------ 234

  Fly   576 DIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKF 640
             :|:|..:.||.:  ||.:.:  .::..|.:: ..||.|:||::|||||         :.:...|
  Fly   235 -VRLNRRIAEINW--KGADEL--TVRCWNGEV-ITADHVICTVSLGVLK---------EQHPKLF 284

  Fly   641 DPPLPDWKQQAIKRLGFGNLNKVVLCFD--------------------------RIFWDPNANLF 679
            .|.||..|.:||:.|..|.::|..|.|:                          .:||  ..::|
  Fly   285 VPALPAAKVRAIEGLKLGTVDKFFLEFENPPLPGDWPGFNCLWLKEDLEELRASELFW--LESVF 347

  Fly   680 GHVGSTTASRGEMFLFWSISSSP-VLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQ 743
            |              |:.:|..| :|...:.|..|..:|::|::.::...:.:.:. |.......
  Fly   348 G--------------FYPVSRQPRILQGWIIGPHARHMETLTEERVLEGLLWLFRK-FLPFETAH 397

  Fly   744 PKETVVTRWRSDPWARGSYSYVSVGSSG---SDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRN 805
            |...:.|:|.::|..||||::.|..:..   ..:| |.||:     :|..|.|||.||||.|.::
  Fly   398 PVRMLRTQWHANPNFRGSYTFRSTYTDALRTGAWD-LEAPL-----QDVCGRPRLQFAGESTHKH 456

  Fly   806 YPATVHGAYLSGLREAGRIADYY 828
            :.:|||||..:|.|||.|:..||
  Fly   457 FYSTVHGAVETGWREAERLHLYY 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311
NAD_binding_8 269..327 CDD:290186 23/58 (40%)
Amino_oxidase 274..824 CDD:279874 136/590 (23%)
CG7460NP_001261998.1 Amino_oxidase 32..476 CDD:279874 134/584 (23%)
NAD_binding_8 33..>74 CDD:290186 15/40 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452796
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46708
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10742
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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