DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and Maob

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_037330.1 Gene:Maob / 25750 RGDID:3041 Length:520 Species:Rattus norvegicus


Alignment Length:630 Identity:137/630 - (21%)
Similarity:230/630 - (36%) Gaps:163/630 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 VIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVGGRISTFR-KNSYIADVGAMVVTGVYGNPMTI 330
            |||:|.||||:|.|..|...|:.|:||||||.||||..|.| ||....|:|...| |...|.:..
  Rat     7 VIVVGGGISGMAAAKLLHDCGLSVVVLEARDCVGGRTYTIRNKNVKYVDLGGSYV-GPTQNRILR 70

  Fly   331 LSKQIGMDLVPIQQTCPL-YGPDGK------PVPKEKDDVIEREFNRLLESASYLSHRLDFNYAG 388
            |:|::|::...:.:...| :...||      |.|...:.:...::|.|..:...:...:    ..
  Rat    71 LAKELGLETYKVNEVERLIHFVKGKSYAFRGPFPPVWNPITYLDYNNLWRTMDEMGQEI----PS 131

  Fly   389 DCPVSLGDALEW-IISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHLAMI 452
            |.|.....|.|| .::|:|:         :.:|..|.:     .:::.||             .:
  Rat   132 DAPWKAPLAEEWDYMTMKEL---------LDKICWTNS-----TKQIATL-------------FV 169

  Fly   453 NQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAKLHELEQNRPSDVYLSSR 517
            |            .|                             :.|:.||:             
  Rat   170 N------------LC-----------------------------VTAETHEV------------- 180

  Fly   518 DRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENLDIRVNSA 582
            ..|...|:..  :....||:  :|..:..|:.  :|||       |...|...:.:.|..||...
  Rat   181 SALWFLWYVK--QCGGTTRI--ISTTNGGQER--KFIG-------GSGQVSERIKDILGDRVKLE 232

  Fly   583 VKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDW 647
            ...|.....|..||   :||.|.:: |:|..|:..:. .||.:.:.|           .||||..
  Rat   233 RPVIHIDQTGENVV---VKTLNHEI-YEAKYVISAIP-PVLGMKIHH-----------SPPLPIL 281

  Fly   648 KQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISS-------SPVLL 705
            :.|.|.|:..|::.|.::.:...||...    ...|:......|..:.:::..       :.::.
  Rat   282 RNQLITRVPLGSVIKCMVYYKEPFWRKK----DFCGTMVIEGEEAPIAYTLDDTKPDAGCAAIMG 342

  Fly   706 ALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSY-SYVSVGS 769
            .::|..|..||....::.:...| .:...:..:....||.......|..:.::.|.| :|...|.
  Rat   343 FILAHKARKLVRLTKEERLRKLC-ELYAKVLNSQEALQPVHYEEKNWCEEQYSGGCYTAYFPPGI 406

  Fly   770 SGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREA-------GRIADY 827
            ......:|..||           .::||||..|..::...:.||..:|.|.|       |:|.:.
  Rat   407 LTQYGRVLRQPV-----------GKIFFAGTETASHWSGYMEGAVEAGERAAREILHAIGKIPED 460

  Fly   828 YLGYPEGTPPDIGYSVAEAAN------LVSVGNVVKLRDLSPNLS 866
            .:..||  |..:........|      |.||..::||..|:..||
  Rat   461 EIWQPE--PESVDVPARPITNTFLERHLPSVPGLLKLLGLTTILS 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311
NAD_binding_8 269..327 CDD:290186 29/58 (50%)
Amino_oxidase 274..824 CDD:279874 119/573 (21%)
MaobNP_037330.1 YobN 5..451 CDD:224152 123/574 (21%)
NAD_binding_8 9..75 CDD:290186 32/66 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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