DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and hpo-15

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_504456.1 Gene:hpo-15 / 178934 WormBaseID:WBGene00016061 Length:527 Species:Caenorhabditis elegans


Alignment Length:602 Identity:142/602 - (23%)
Similarity:232/602 - (38%) Gaps:163/602 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 LKPIPAKKLGKVIVIGAGISGLAVAHQLQQFGMDVI-VLEARDRVGGRISTFRKNSYIADVGAMV 319
            :||       .:.::|||||||:.|.:|.:.|:|.. :.|..||:||||...........:||..
 Worm    30 IKP-------SIAIVGAGISGLSTARRLIELGIDDFDIYEGLDRIGGRIHAIPYKDGFLQMGAQF 87

  Fly   320 VTGVYGNPMTILSKQIGMDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLESASYLSHRLDF 384
            :.|.. ||:..::.::|:                                 |.:..|..:|..:.
 Worm    88 INGAQ-NPLYKIANRLGL---------------------------------LADVVSDTAHVDNA 118

  Fly   385 NYAGDCPVSLGDALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRDTIGKLKNEHL 449
            ::|      .|:                  |::||            :.:||..|...||     
 Worm   119 HFA------FGN------------------QNVQE------------KDIKTFLDFTSKL----- 142

  Fly   450 AMINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETIS--TFHDLHAEEKQMLAKLHELEQNRPSDV 512
                         |.||       |:.....|:|..  ||.::..     |..:|.|:....:|.
 Worm   143 -------------DPKY-------RSIAKHDEKTARRYTFKEIFT-----LDYMHFLKSQNFTDQ 182

  Fly   513 YLSSRDRLILDWHFANLEFANATRLNNLS---LKHW-DQDDDFEFIGHHTTVRNGYSCVPVALTE 573
            ..:..|.|...:. :..||..|...:.||   ||.| |...:.|   ...|.:.|:..:      
 Worm   183 QTNVFDSLARSFR-SYWEFEWAADWSTLSVHVLKEWNDYGPECE---SFATNKIGFKAI------ 237

  Fly   574 NLD----------IRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVA 628
             ||          ...||.|:.|...:...::   .|..|:..:..:.|.::.|.:||||| ...
 Worm   238 -LDDIAAPIPRKAFNFNSRVENINLDSNTGKI---KLTVSDRAVPTEYDYIIVTSSLGVLK-KYH 297

  Fly   629 HKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHV-------GSTT 686
            ||        .|.||||..|.:||:::|||...||...::..||..|......:       ....
 Worm   298 HK--------MFTPPLPRQKIEAIEKIGFGGSCKVFFEWETPFWSNNTYSIAPLPVKGMIRDKLD 354

  Fly   687 ASRGEMFLFWSISSSP-VLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVT 750
            |...|..:...:..:| ||.|..||....||::::::.:..|...::::::.:.|:|:|.:.:.|
 Worm   355 AFEDETTILQVVDWAPNVLSAWYAGRGHQLVDNMSEEELKQRITKLMRDMYNDKSIPEPSKIIRT 419

  Fly   751 RWRSDPWARGSYSYVS--VGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGA 813
            :...:....|||||::  ...|...:..||.||      ..||.|::.||||.|......|..|.
 Worm   420 QLTKNELLLGSYSYMTQVQALSHISHSQLAIPV------KLEGRPKVLFAGEATHHRLFQTTIGG 478

  Fly   814 YLSGLREAGRIADYYLG 830
            ||||.|||.|..:.:.|
 Worm   479 YLSGRREADRAVNDWFG 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311
NAD_binding_8 269..327 CDD:290186 21/58 (36%)
Amino_oxidase 274..824 CDD:279874 135/576 (23%)
hpo-15NP_504456.1 Amino_oxidase 41..488 CDD:366721 135/575 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2622
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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