DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(var)3-3 and Lao1

DIOPT Version :9

Sequence 1:NP_649194.1 Gene:Su(var)3-3 / 40217 FlyBaseID:FBgn0260397 Length:890 Species:Drosophila melanogaster
Sequence 2:NP_598653.3 Gene:Lao1 / 100470 MGIID:2140628 Length:523 Species:Mus musculus


Alignment Length:674 Identity:138/674 - (20%)
Similarity:244/674 - (36%) Gaps:210/674 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 RSGILGHRVFLNIRNSLLHMWVDNPKIQLSFEIALKNLPPPFDSEPSLVRRVHSFLERHGFINFG 251
            :||||...:.|.:.:.|           ..:|..:|....| |.|..|:      :.::|     
Mouse     9 KSGILVWGILLCVSSCL-----------ALYENLVKCFQDP-DYEAFLL------IAQNG----- 50

  Fly   252 IFKRLKPIPAKKLGKVIVIGAGISGLAVAHQLQQFGMDVIVLEARDRVGGRISTFRKNSYIADVG 316
                |...|..|  :|:|:|||::||..|..||..|.:|.:|||.:.:|||:.|.|         
Mouse    51 ----LHTSPLSK--RVVVVGAGMAGLVAAKTLQDAGHEVTILEASNHIGGRVVTLR--------- 100

  Fly   317 AMVVTGVYGNPMTILSKQIG--MDLVPIQQTCPLYGPDGKPVPKEKDDVIEREFNRLLESASYLS 379
                           :|:.|  ::|.|::            :|:                    |
Mouse   101 ---------------NKEEGWYLELGPMR------------IPE--------------------S 118

  Fly   380 HRLDFNYAGDCPVSLG-----DALEWIISMQEMQVMHKRGQHMQEIIATQTKIIEQRRRLKTLRD 439
            |:|...|.....:.|.     |:..|.:       ::.:.....|::| ...|:....|......
Mouse   119 HKLIHTYVQKLGLKLNKFHQYDSNTWYL-------LNGQRYRASEVMA-NPGILGYPLRPSEKNK 175

  Fly   440 TIGKLKNEHLAMINQRKPKGTDGDLKYCYQEFNIRNTQIKMEETISTFHDLHAEEKQMLAKLHEL 504
            |:..|..:.:..|...:.......|...|..::.:...:| |.|:|         |..:..:.::
Mouse   176 TVTDLFYQAITKIKPHRKTSNCSQLLSLYDSYSTKAYLMK-EGTLS---------KGAIEMIGDI 230

  Fly   505 EQNRPSDVYLSSRDRLILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPV 569
             .|..:..|.|..:.|               |:.::    :.:.|.|      :.:..|:..:|.
Mouse   231 -MNENAGYYKSLLESL---------------RIASI----FSKSDQF------SEITGGFDQLPN 269

  Fly   570 ALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQ 634
            .|:.:|      ....|:.|:|...||.:..|.   ::.|:.|.....|.......|:....::.
Mouse   270 GLSASL------KPGTIRLGSKVERVVRDGPKV---KVMYRTDGPTSALHKLTADYAIITASAKA 325

  Fly   635 SNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSIS 699
            :..:.|.|||...|..|::.:.:.:..||||..:..||:.:....|:   :...|...|:::...
Mouse   326 TRLITFQPPLSREKTHALRSVHYTSATKVVLVCNERFWEQDGIRGGY---SITDRPSRFIYYPSH 387

  Fly   700 SSP----VLLA---------LVAGMAAN-LVESVTDDIIIGRCMSVLKNIFGNTSVPQPKE---- 746
            |.|    ||||         ..|.:..| :|:.|.||      ::.:..|        |||    
Mouse   388 SLPGGKGVLLASFTVGDDSSFFAALKPNQVVDVVLDD------LAAVHRI--------PKEELKR 438

  Fly   747 ----TVVTRWRSDPWARGS------YSYVSVGSSGSDYD-LLAAPVIPPSSKDAEGLPRLFFAGE 800
                :.:..|..||...|:      |.:|       ||. .|:.|         ||  |::||||
Mouse   439 MCPKSAIKHWSLDPLTIGAFTEFTPYQFV-------DYSKQLSQP---------EG--RIYFAGE 485

  Fly   801 HTIRNYPATVHGAYLSGLREAGRI 824
            ||...: :.:..|..||:|.:..|
Mouse   486 HTCLPH-SWIDTAIKSGIRASCNI 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(var)3-3NP_649194.1 SWIRM 165..250 CDD:282311 13/62 (21%)
NAD_binding_8 269..327 CDD:290186 19/57 (33%)
Amino_oxidase 274..824 CDD:279874 116/585 (20%)
Lao1NP_598653.3 NAD_binding_8 62..129 CDD:290186 28/122 (23%)
Amino_oxidase 67..508 CDD:279874 116/585 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1231
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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