DRSC/TRiP Functional Genomics Resources

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Protein Alignment obst-F and LOC1270272

DIOPT Version :10

Sequence 1:NP_649186.1 Gene:obst-F / 40209 FlyBaseID:FBgn0036947 Length:326 Species:Drosophila melanogaster
Sequence 2:XP_308954.4 Gene:LOC1270272 / 1270272 VectorBaseID:AGAMI1_013065 Length:208 Species:Anopheles gambiae


Alignment Length:136 Identity:29/136 - (21%)
Similarity:49/136 - (36%) Gaps:42/136 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 DSNYKLAKDNLLSKVNVFPRHICSINDTVS----AEEAATEYEFAIR---------QMVRSRTVA 141
            |.|....:|:.|..::.|..     :||.|    .|:....:.|.:.         |...|...:
Mosquito   462 DRNDDFDEDDDLDNLSNFDE-----SDTASVLSDTEDGYRAHAFKLTHSVDRFSSPQSTPSFLSS 521

  Fly   142 ASDNSDSPRFDLILLGMGSDGHVASLFPNHPALEVKDDWVTFLTDSH---KPPPE-------RIT 196
            .|...|....|.:|        |.||||..|      .:::|.:::.   :.||:       |||
Mosquito   522 QSSEDDLKNPDSLL--------VPSLFPYVP------PYLSFSSNTKRGPRVPPDLHRVLKWRIT 572

  Fly   197 FTLPVI 202
            ..:|.:
Mosquito   573 NIMPKV 578

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity