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Protein Alignment Ssk and nhr-13
DIOPT Version :9
Sequence 1: | NP_649184.1 |
Gene: | Ssk / 40207 |
FlyBaseID: | FBgn0036945 |
Length: | 162 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001024269.1 |
Gene: | nhr-13 / 178696 |
WormBaseID: | WBGene00003612 |
Length: | 425 |
Species: | Caenorhabditis elegans |
Alignment Length: | 139 |
Identity: | 24/139 - (17%) |
Similarity: | 56/139 - (40%) |
Gaps: | 37/139 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 SIFIKALKLIINLVI---IFLYRWG-DGGEFLGIGGTW-------------NLNEEKSADAEIVA 56
|:|...|...::.|| .:.|:.| :..|.:...||: |.|....:..:::.
Worm 229 SVFCYRLVCAVDFVINSAYYTYKRGIEHNELVLSDGTFIPMVPTPLTGYEENANLLFQSQDDLMK 293
Fly 57 SGVMVGFLIYTGCHTIAFAFGTTKHKGELCDTIMNVVGCIMWIAVGGVALHYWKGYMSDEGFLYV 121
...::..:::.....:.||.....|: |.| ::..: |:..:: |:: :|::|
Worm 294 FRTLMPLILHQWETCVPFAQLAPSHE-EFC--LLKAI-CVWHVS-------YYR--LSEDG---- 341
Fly 122 NSERQVGIA 130
|::.||
Worm 342 ---RRIAIA 347
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Ssk | NP_649184.1 |
None |
nhr-13 | NP_001024269.1 |
ZnF_C4 |
21..79 |
CDD:197701 |
|
NR_LBD |
198..382 |
CDD:132726 |
24/139 (17%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
1 |
0.950 |
- |
0.928771 |
Normalized mean entropy |
S12566 |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.950 |
|
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