DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment obst-J and LOC1279202

DIOPT Version :10

Sequence 1:NP_649179.2 Gene:obst-J / 40202 FlyBaseID:FBgn0036940 Length:353 Species:Drosophila melanogaster
Sequence 2:XP_318884.4 Gene:LOC1279202 / 1279202 VectorBaseID:AGAMI1_000952 Length:334 Species:Anopheles gambiae


Alignment Length:273 Identity:59/273 - (21%)
Similarity:95/273 - (34%) Gaps:49/273 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 VPGACTDE-----SVFCGLTNSVERVQSDCTRYRQCLEGG---------------SFAVAKCSVG 122
            |..:.:||     |..|...|........|.:|.||.:|.               .....||.:.
Mosquito    77 VQASASDEIDPELSENCPEPNGYFADAEQCDKYYQCRDGQITEKLCPDGMVFNDYDSDQEKCDLP 141

  Fly   123 NYFDPARRACLPVAISAAHQCSCVLPDNATLANPSDCETYFRCHSGQAELVQCPSGDYFDERVSS 187
            ...|.::|..|...|::.|   |...:....:....|:.::.|..|...::.||.|..|:.|   
Mosquito   142 FNIDCSKRPKLQTPIASLH---CPRQNGYFASETGACDKFYYCVDGMFNMITCPEGLVFNPR--- 200

  Fly   188 CVPDHTGICLEKPTMPPTLTEQALAMDECIR------TGSRLAPHSR-----DCQRYYICAKKRV 241
                 ||||    |.|....::..:.::..:      ..:..|.|.|     |||.:|:|.....
Mosquito   201 -----TGIC----TWPDEAQKKGCSSEDVFKFTCPKVNETEGATHPRYADPDDCQFFYVCINGET 256

  Fly   242 LEMR-CPRGQYFDVVRRYC--ALDLGSECQALQAEKQDLELEENIQVELEKNIQMDIPAKHKVKN 303
            .... |..||.||.|.::|  |..:.......:....|.:|||.......|....:.|:|...:.
Mosquito   257 PRRNGCKLGQAFDDVAKHCEWARKVPDCADWYKDRLTDKQLEELENPPTPKPKPANSPSKVSRRR 321

  Fly   304 QGHKPVQKNSEKE 316
            ...:|.|...:.|
Mosquito   322 PSKRPKQPVDDSE 334

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity