DRSC/TRiP Functional Genomics Resources

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Protein Alignment gig and rap1gapb

DIOPT Version :9

Sequence 1:NP_524177.1 Gene:gig / 40201 FlyBaseID:FBgn0005198 Length:1847 Species:Drosophila melanogaster
Sequence 2:XP_009300955.1 Gene:rap1gapb / 100538309 ZFINID:ZDB-GENE-131119-39 Length:721 Species:Danio rerio


Alignment Length:580 Identity:120/580 - (20%)
Similarity:199/580 - (34%) Gaps:187/580 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1327 SRARNPVRRVNSSPEMSSSWRQSFLTNKPTPLSQEPVKTTADEPQSLLTLKKKTVQYSTKDM--- 1388
            ||:|:..::....|.:|.            || :.|.:..:..|....||.|      |.|:   
Zfish    21 SRSRHVWKQDGRIPRISD------------PL-ERPGRVKSLPPLPAQTLLK------TSDIFAM 66

  Fly  1389 --RVSCEAIPEEIAGSTPPSQAAALALQPESGTLP-PKQHSA------------DDVSSHVAGGS 1438
              |:....:.|:.....||       |:.|...:| |..|..            .....:...|:
Zfish    67 IERMQSSRMDEQRCSLPPP-------LKTEEDYIPYPSVHEVLGRTGTLPLILLPQFGGYWIEGT 124

  Fly  1439 NLQAGGSTLKLGKPPLSPGQPPLLGTGRVTSFGGTSVPQPGALAKSSSSG--------------- 1488
            |...|.|:        :|.:||               |.|.:..|..::.               
Zfish   125 NHDLGSSS--------TPEEPP---------------PCPASQVKLETNSIAKIYRKDFLGKEHF 166

  Fly  1489 ---SNGTNVG--VITSDYDNGNNGNGD------MMRGRSKTISVVREVNNGNTRPPPASSFRNFG 1542
               |..:.:|  :.:..||    ..||      ::|.|.||...|          .|.|....| 
Zfish   167 NYYSVDSALGHLIFSMKYD----VIGDQEHLRLLLRSRFKTYHDV----------IPISCLTEF- 216

  Fly  1543 AAKPPINTKLCMNPSFIFMQLYTTGQLGVTDEPLKVGPENSSAVSLIDLVPPFETH------KIG 1601
                         |:.|.|......::.|......:.|:.|.      |:..|:.|      |.|
Zfish   217 -------------PNVIQMAKLVCEEVNVDRFYPVLYPKASR------LIVTFDEHVISNNFKFG 262

  Fly  1602 VLYVGQGQCNNEVEILRNSHGSARYVEFLRNIGTLVSLKEAE--QNNLFIMLDRNGADGKFAYIW 1664
            |:|....|.:.| |:..|:..|..:||||..:|..:.|.:.:  :..|.:...:.|.:..:....
Zfish   263 VIYQKFAQTSEE-ELFGNNEESPAFVEFLEFLGEKIDLHDFKGFRGGLDVTHGQTGTESVYVNFH 326

  Fly  1665 KDDILQVTFHVATLMPTNLQDDPNCNEKKSHIGNDFVKIIYNESGEEYNLNTISGQFNYACVIVE 1729
            ..:|:   |||:|.:|.. :.|....::|.|||||.|.|::.|....:..:.|:..|.:|.|:|:
Zfish   327 NKEIM---FHVSTKLPYT-EGDSQQLQRKRHIGNDIVAIVFQEENTPFVPDMIASNFLHAYVVVQ 387

  Fly  1730 PLDLNSN----RVYVKARSEISKFVCHAEYRIVSDRSAPLL------ARQMALHANLASLVYQSV 1784
            ..:..::    :|.|.||.::..|             .|.|      .:....|..|.:.:..: 
Zfish   388 VENACTDNVLYKVSVTARDDVPFF-------------GPALPDPAVFKKSSEFHEFLLTKLINA- 438

  Fly  1785 QKKHPYASNWLERLRKL-KRLRSKLIEGL------NSQQKSGSASSGIGINASAIGSDMD 1837
                .|:....|:..|| :|.||.|:|.|      |||...|            :|.|.|
Zfish   439 ----EYSCYKAEKFAKLEERTRSALLETLYEELHMNSQSMMG------------LGGDDD 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gigNP_524177.1 DUF3384 40..467 CDD:288697
HEAT repeat 484..515 CDD:293787
Tuberin 566..882 CDD:281532
Rap_GAP 1617..1802 CDD:280332 44/197 (22%)
rap1gapbXP_009300955.1 GoLoco 62..82 CDD:280368 3/19 (16%)
Rap_GAP 277..456 CDD:280332 45/200 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1559
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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