DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and GLR1.1

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_187061.1 Gene:GLR1.1 / 819566 AraportID:AT3G04110 Length:808 Species:Arabidopsis thaliana


Alignment Length:536 Identity:109/536 - (20%)
Similarity:186/536 - (34%) Gaps:169/536 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 DVDASEAGFDADAPVETLETINRKKPKLREMLDWIGG------------------KHLRIATLED 92
            |:..|:..|.:    ||.|.:|..:.|.|.:..|.||                  :|..:|  |.
plant   359 DIQISDNKFIS----ETFEIVNIGREKQRRIGLWSGGSFSQRRQIVWPGRSRKIPRHRVLA--EK 417

  Fly    93 FPLSYTEVLEN-GTRVGHGVSFQ---------IIDFLKKKFN-----FTYEV-VVP----QDNII 137
            .......||.. |.:|.|.||.:         :..|..:.|.     |.||: .:|    .||: 
plant   418 GEKKVLRVLVTAGNKVPHLVSVRPDPETGVNTVSGFCVEVFKTCIAPFNYELEFIPYRGNNDNL- 481

  Fly   138 GSPSDFDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLL 202
                    :.:........|.|...|...|::..:|.::....|.|..|:.::  ::|.......
plant   482 --------AYLLSTQRDKYDAAVGDITITSNRSLYVDFTLPYTDIGIGILTVK--KKSQGMWTFF 536

  Fly   203 APFEFWVWILILVSLLAVGPIIYALIILRN---RLTGD-GQQTPYSLGHCAWFVYGALM-KQGST 262
            .|||..:|:......:..|.:::  ::.|:   ...|. |||    |....||.:..:: .....
plant   537 DPFEKSLWLASGAFFVLTGIVVW--LVERSVNPEFQGSWGQQ----LSMMLWFGFSTIVFAHREK 595

  Fly   263 LSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTV------------NDILTKN 315
            |..:  |:|.|...|...:.||||.|:||||:..|:|:..|.:..|            ..|....
plant   596 LQKM--SSRFLVIVWVFVVLILTSSYSANLTSTKTISRMQLNHQMVFGGSTTSMTAKLGSINAVE 658

  Fly   316 KHFVSMRGGGVEYAIRTTNESLSMLNRMIQN--NYAVFSDETNDTYNLQNYVEKNGYVFVRDRPA 378
            .:...:|.|.:.:.|   || :..|:.:|.|  |..|.:|...:|         ||:.|      
plant   659 AYAQLLRDGTLNHVI---NE-IPYLSILIGNYPNDFVMTDRVTNT---------NGFGF------ 704

  Fly   379 INIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIV 443
                     :::|                               ||:|......|:..|...|::
plant   705 ---------MFQK-------------------------------GSDLVPKVSREIAKLRSLGML 729

  Fly   444 KHLSKR---NLPSAEI--CPQDLGGTE-----------RQLRNGDLMMTYYIMLAGFATALAVFS 492
            |.:.|:   .|.|..:  ..:::..|.           |:||.       ..::||.|..|.   
plant   730 KDMEKKWFQKLDSLNVHSNTEEVASTNDDDEASKRFTFRELRG-------LFIIAGAAHVLV--- 784

  Fly   493 TELMFRYVNSRQEANK 508
              |.....::|||.::
plant   785 --LALHLFHTRQEVSR 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 26/128 (20%)
Lig_chan 209..458 CDD:459656 55/272 (20%)
GLR1.1NP_187061.1 PBP1_GABAb_receptor_plant 31..397 CDD:380645 12/41 (29%)
Periplasmic_Binding_Protein_Type_2 421..737 CDD:473866 80/393 (20%)

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