DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and GLR2.8

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001324459.1 Gene:GLR2.8 / 817459 AraportID:AT2G29110 Length:948 Species:Arabidopsis thaliana


Alignment Length:614 Identity:126/614 - (20%)
Similarity:229/614 - (37%) Gaps:154/614 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TGIELLVAAALCVACPPLNDSPPTNLIQMGENGTLSPVTELPMDVDA-SEAGFDADAPVETLETI 66
            |.:.:.|......:.|..|.|..:|  .|.:.|||......|..::| ||..|:..|....|...
plant   324 TALAMAVEKTNISSFPYNNASGSSN--NMTDLGTLHVSRYGPSLLEALSEIRFNGLAGRFNLIDR 386

  Fly    67 NRKKPKLREMLDWIGGKHLRIA--------------------TLEDF-PLSYT----------EV 100
            ..:.||. |:::::|.:. ||.                    |.|.| ||.:.          |:
plant   387 QLESPKF-EIINFVGNEE-RIVGFWTPSNGLVNVNSNKTTSFTGERFGPLIWPGKSTIVPKGWEI 449

  Fly   101 LENGTRVGHGVSFQIIDFLKKKFNFT---------------YEV-------------VVPQDNII 137
            ..||.::..||..:     |..|||.               |.:             |:||....
plant   450 PTNGKKIKVGVPVK-----KGFFNFVEVITDPITNITTPKGYAIDIFEAALKKLPYSVIPQYYRF 509

  Fly   138 GSPSDFDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTL---DEGEWIMVMQRPRESASGS 199
            .||.|....|:..|::.|:|.....: :::..||.  |:..||   :.|..:||..|..|:.:..
plant   510 ESPDDDYDDLVYKVDNGTLDAVVGDV-TITAYRSL--YADFTLPYTESGVSMMVPVRDNENKNTW 571

  Fly   200 GLLAPFEFWVWILILVSLLAVGPIIYALIILRNRLTGDGQQTP-YSLGHCAWFVYGALM--KQGS 261
            ..|.|:...:|:......:.:|.:::   :..:|:..|.:..| :.:|...||.:..::  .:..
plant   572 VFLKPWGLDLWVTTACFFVLIGFVVW---LFEHRVNTDFRGPPHHQIGTSFWFSFSTMVFAHREK 633

  Fly   262 TLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGGGV 326
            .:|.:|   |.:...|...:.:||..||||||:|||:.:|......|.|:: ||..:|..:.|..
plant   634 VVSNLA---RFVVVVWCFVVLVLTQSYTANLTSFLTVQRFQPAAINVKDLI-KNGDYVGYQHGAF 694

  Fly   327 EYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYVFVRDRPAINIMLYRDYLYRK 391
                                              :::::.|.|:...:.:|..:.......|...
plant   695 ----------------------------------VKDFLIKEGFNVSKLKPFGSSEECHALLSNG 725

  Fly   392 TVSFSDEKV---------HC-PFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHL 446
            ::|.:.::|         :| .:|:.:..|......||:|..|.|:......:|::.:...::|:
plant   726 SISAAFDEVAYLRAILSQYCSKYAIVEPTFKTAGFGFAFPRNSPLTGDVSKAILNVTQGDEMQHI 790

  Fly   447 SKRNLPSAEICPQD---LGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEANK 508
            ..:.......||..   |......||:    .....::||.|:.||:.....:|.|.|       
plant   791 ENKWFMKQNDCPDPKTALSSNRLSLRS----FWGLFLIAGIASFLALLIFVFLFLYEN------- 844

  Fly   509 WARHGIGRTPNGQSVAPSRWLRGWRRLNS 537
              ||.: ...:..|:        ||:|.|
plant   845 --RHTL-CDDSEDSI--------WRKLTS 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 35/170 (21%)
Lig_chan 209..458 CDD:459656 46/261 (18%)
GLR2.8NP_001324459.1 PBP1_GABAb_receptor_plant 35..419 CDD:380645 23/98 (23%)
GluR_Plant 454..795 CDD:270404 75/389 (19%)

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