DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grik5

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:596 Identity:139/596 - (23%)
Similarity:225/596 - (37%) Gaps:96/596 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 IGGKHLRIATLEDFP-----LSYTEVLENGTRVGHGVSF--QIIDFLKKKFNFTYEVVVPQDNII 137
            :..|.|.|.|:.:.|     ::|.|...|....|..|..  ::.|.||    |||.:.:..|.:.
Zfish   425 LANKSLIITTILENPYVMRKINYQEFEGNEQYEGFCVDMLRELSDILK----FTYRIKLVDDGLY 485

  Fly   138 GSP---SDFDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGS 199
            |:|   ..:...:.|::|.. .|||.|.....|::...:.:|...:..|..|:............
Zfish   486 GAPEPNGSWTGMVGELINRK-ADLAVAAFTITSEREKVIDFSKPFMTLGISILYRVHIGRKPGYF 549

  Fly   200 GLLAPFEFWVWILILVSLLAVGPIIYALI------------ILRNRLTGDGQQTPYSLGHCAWFV 252
            ..|.||...||:.:|::.|||..:::...            .||.|  .|..:..|:||:..||.
Zfish   550 SFLDPFSPAVWLFMLLAYLAVSCVLFLSARLSPYEWYNPHPCLRER--RDLLENQYTLGNSLWFP 612

  Fly   253 YGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTK-NK 316
            .|..|:|||.:.|.|.|||.:...||.|..|:.|.|||||.||||:.:..:|..:.:|:..: |.
Zfish   613 VGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESPDDLADQTNI 677

  Fly   317 HFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYVFVRD-RPAIN 380
            .:.::.||             |.:...:.:.|..:....|..|:      |...|||:. ...|.
Zfish   678 QYGTIHGG-------------STMTFFMNSRYQTYQRMWNYMYS------KQPSVFVKSTEEGIA 723

  Fly   381 IMLYRDY--LYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIV 443
            .::...|  |...|::.....::|...........|......|:||.........:|.|.|:..:
Zfish   724 RVVNSKYAFLLESTMNEYHRSLNCNLTQIGGLLDTKGYGIGMPLGSPFRDELSLAVLQLQENNRL 788

  Fly   444 KHLSKRNLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEANK 508
            :.|.:|.....: ||::.....:.|...::...:.:::.|.  .:|||...:.|.:...|.....
Zfish   789 EILKRRWWEGGK-CPKEEDHRAKGLGMENIGGIFVVLICGL--IIAVFVAVMEFVWSTRRSAETD 850

  Fly   509 WAR--------HG----------IGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPP 555
            ..|        |.          :....|..|...|..||..|.|:|..     |..|...:|..
Zfish   851 EVRPLSCDRQYHSHTTVSVCQEMLTEFRNAVSCKKSSRLRRRRPLSSSL-----ALRHPTRITLG 910

  Fly   556 PPYQSIFNGGSHGDPLNRWRR-PLANGNAL-GNGVLLGGDSEGGVRRLINGRDYMVFRNPNGQSQ 618
            .|           .||...|. .|:||... |.|.|.||...||....:......:..:|.|.:.
Zfish   911 AP-----------RPLRLVREMRLSNGKLYSGTGPLTGGSGPGGGPTDMGPGPQRLLEDPLGANS 964

  Fly   619 LVPVRSPSAAL 629
                 :|:.||
Zfish   965 -----TPAVAL 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 94/379 (25%)
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 38..412 CDD:107389
ANF_receptor 55..392 CDD:279440
Periplasmic_Binding_Protein_Type_1 <313..383 CDD:299141
Periplasmic_Binding_Protein_Type_2 427..797 CDD:304360 98/395 (25%)
Lig_chan 558..828 CDD:278489 69/291 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591392
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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