DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and grin1a

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_073791110.1 Gene:grin1a / 767745 ZFINID:ZDB-GENE-051202-1 Length:966 Species:Danio rerio


Alignment Length:625 Identity:117/625 - (18%)
Similarity:212/625 - (33%) Gaps:175/625 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 DADAPVETLETINRKKPKL---------------REMLDWIGGK-----------HLRIATLEDF 93
            |.|........:|.:|.:|               :..:.|.||:           .|:|.|:...
Zfish   360 DGDRKYAHYSILNYQKSRLIQVGIYNGTQVVMNKQRKIIWPGGETERPRGFQMSTRLKIVTIHQE 424

  Fly    94 PLSYT-----------EVLENGTRVG---------------------HGVSFQIIDFLKKKFNFT 126
            |..|.           |...||..:.                     :|....::..|....|||
Zfish   425 PFVYVKPTTLEGTCKEEYTPNGVLIKKVICTGPNETIPGRPIVPQCCYGFCIDLLIKLALTMNFT 489

  Fly   127 YEVVVPQDNIIGSPSDFDRSLIEMVNSST---------------VDLAAAFIPSLSDQRSFVYYS 176
            |||.:..|...|:.        |.||:|.               .|:..|.:...:::..::.:|
Zfish   490 YEVHLVADGKFGTQ--------ERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERAQYIEFS 546

  Fly   177 TTTLDEGEWIMVMQR-PRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILRNRLTGDG-- 238
            .....:|..|:|.:. ||.:.  ...:.||:..:|:|:.:|:..|..::|.|    :|.:..|  
Zfish   547 KPFKYQGLTILVKKEIPRSTL--DSFMQPFQSTLWLLVGLSVHVVAVMLYLL----DRFSPFGRF 605

  Fly   239 -------QQTPYSLGHCAWFVYGALMKQG-STLSPIADSTRLLFATWWIFITILTSFYTANLTAF 295
                   ::...:|....||.:|.|:..| ...:|.:.|.|:|...|..|..|:.:.|||||.||
Zfish   606 KVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAF 670

  Fly   296 LTLSKFTLPYNTVNDILTKNKH----FVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETN 356
            |.|.:.......:||...:|..    :.:::...|:...|...|..:|...|.::||...::.  
Zfish   671 LVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEA-- 733

  Fly   357 DTYNLQNYVEKNGYVFVRDRPAINIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYP 421
                :|...:...:.|:.|...:..               :....|......|.|.:.    .:.
Zfish   734 ----IQAVRDNKLHAFIWDSAVLEF---------------EASQKCDLVTTGELFFRS----GFG 775

  Fly   422 IG----SNLSQLFDPELLHLVESGIVKHL-----------SKRNLPSAEICPQDLGGTERQLRNG 471
            ||    |...|.....:|...|:|.::.|           |:.|.| |.:..:::.|        
Zfish   776 IGMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAP-ATLTFENMAG-------- 831

  Fly   472 DLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLN 536
                .:.::..|.|..:.:...|:.::            ||...|....|....:  :..||:..
Zfish   832 ----VFMLVAGGIAAGIFLIFIEIAYK------------RHKDARRKQMQLAFAA--VNVWRKNL 878

  Fly   537 SGHGQLLGASTHGQNVTPPPPYQSI------FNGGSHGDP 570
            ..:.:..|:...|...||..|..|:      .:|.:..||
Zfish   879 QDNKESSGSQAVGAAGTPSLPSSSVETQDDRKSGRADSDP 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 28/167 (17%)
Lig_chan 209..458 CDD:459656 58/277 (21%)
grin1aXP_073791110.1 None

Return to query results.
Submit another query.