DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grin2ab

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_009304490.1 Gene:grin2ab / 570493 ZFINID:ZDB-GENE-070424-223 Length:1445 Species:Danio rerio


Alignment Length:669 Identity:146/669 - (21%)
Similarity:237/669 - (35%) Gaps:172/669 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 HLRIATLEDFPLSYTEVLE--NGTRVGHGVSFQ--------------------IIDFLKK---KF 123
            ||.|.|||:.|....:.::  .||.:.:.|..:                    .||.|||   ..
Zfish   395 HLSIVTLEERPFVIVDDVDILTGTCMRNSVPCRKHIKDNTTEGSYVKKCCKGFCIDILKKIARNV 459

  Fly   124 NFTYEVVVPQDNIIGSPSD--FDRSLIEMVNSSTVDLAAAFIPSLSDQRS-FVYYSTTTLDEGEW 185
            .|||::.:..:...|...:  ::..:.|:|....|....:.  :::::|| .:.:|...::.|..
Zfish   460 KFTYDLYLVTNGKHGKKINNVWNGMVGEVVYKKAVMAVGSL--TINEERSEAIDFSVPFVETGIS 522

  Fly   186 IMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPI-------IYALIILRNRLTGDGQQTP- 242
            :|| .|...:.|.|..|.||...||:::.|.||.|..|       |..|...||...|.....| 
Zfish   523 VMV-SRSNGTVSPSAFLEPFSASVWVMMFVMLLIVTAIAVFLFEFISPLGFNRNLAQGKDPHGPS 586

  Fly   243 YSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITILTSFYTANLTAF----------- 295
            :::|...|.::|.:......: :|...:::.:.:.|..|..|..:.|||||.||           
Zfish   587 FTIGKAVWLLWGLVFNNSVPVQNPRGTTSKFIVSVWAFFAVIFLASYTANLAAFMIQEEFVDQVT 651

  Fly   296 -LTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTY 359
             |:..||..||:     .:....|.::..|..|..||.        |....:.|.|...:|....
Zfish   652 GLSDRKFQSPYS-----YSPPFRFGTVPNGSTERNIRK--------NYPAMHQYMVKYHQTGVVD 703

  Fly   360 NLQNYVEKNGYV--FVRDRPAINIMLYRD-----------YLYRKTVSFSDEKVHCPFAMAKEPF 411
            .|.:.  |.|.:  |:.|...:|.|..||           |:: .|..:.       .||.|   
Zfish   704 ALVSL--KTGKLDAFIYDAAVLNYMAGRDDGCKLVTIGSGYIF-ATTGYG-------IAMQK--- 755

  Fly   412 LKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKRNLPSAEICPQDLGGT-ERQLRNGDLMM 475
                       ||...:|.|..:|.::..|.::.|..:.|..  ||..:.... ..||...::..
Zfish   756 -----------GSYWKRLVDLAILGIIGDGEMEELEAQWLTG--ICHNEKNEVMSSQLDVDNMAG 807

  Fly   476 TYYIMLAGFATALAVFSTELMF----RYVNSRQEANK-----------WA-RHGI---------- 514
            .:|::.|..|.:|..|..|.:|    ||..:...:.:           |: .||:          
Zfish   808 VFYMLAAAMALSLITFVWEHLFYWRLRYCFTGLCSGRPGILFTISRGIWSCIHGVHIELKKAPEL 872

  Fly   515 GRTPNGQSV---------------APSRWLRGWRRLNSGHGQLLGASTHGQNVTPP-PPYQSIFN 563
            ..:|....:               :|.|.:.......||..:|:|.. .|.|:.|. |||.:...
Zfish   873 DFSPQANMLHLLKSAKEITTLGVTSPKRPMSSILPPTSGLLELMGGG-KGNNLAPKNPPYSNTST 936

  Fly   564 GGSHGDPLNRWRRPLANGNALGN----------GVLLGGDSEGGVR---------RLINGRDYMV 609
            ..|     ||.:.||.|....|.          ||...|.|.||..         |.:..:....
Zfish   937 MLS-----NRLKEPLNNTLLPGQRALSLTDAQPGVAGNGGSTGGGETMRPPASKPRALWKKSVET 996

  Fly   610 FRNPNGQSQLVPVRSPSAA 628
            .|...|.....|..:|.||
Zfish   997 LRQNQGPEDSSPPSAPQAA 1015

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 94/414 (23%)
grin2abXP_009304490.1 PBP1_iGluR_NMDA_NR2 25..382 CDD:107373
ANF_receptor 48..358 CDD:279440
PBP2_iGluR_NMDA_Nr2 393..790 CDD:270436 99/436 (23%)
Lig_chan 544..816 CDD:278489 69/310 (22%)
NMDAR2_C 827..1445 CDD:287527 39/195 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591352
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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