DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grin3a

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:604 Identity:117/604 - (19%)
Similarity:198/604 - (32%) Gaps:183/604 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 DWIGGK--HLRIATLEDFPLSYT----------------EVLENGT------------------- 105
            ||....  |||:.||.:.|..:|                :.|.|.|                   
Zfish   512 DWRHSSRLHLRVVTLVEHPFVFTRDVDDEGLCPAGQLCLDPLTNDTALLESLFQGLQGANDTVPL 576

  Fly   106 ---RVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFD-RSLIEMVNSSTVDLAAAFIPSL 166
               :..:|....:::.|.:...|.:::.:..|...|:..:.. ..|:..:.|....||.... |:
Zfish   577 EFKKCCYGYCIDLLEKLAEDMGFDFDLYIVGDGKYGAYKNGRWTGLVGDLMSGAAHLAVTSF-SI 640

  Fly   167 SDQRSFV------YYSTTTLDEGEWIMVMQRPRESASGSG-LLAPFEFWVWILILVSLLAVGPII 224
            :..||.|      ::||:       :.::.|.|::|:..| .:.|..:.:|:.|.|| |.|..:.
Zfish   641 NSARSQVIDFTSPFFSTS-------LGILVRTRDTAAPIGAFMWPLHWSMWLGIFVS-LHVTAVF 697

  Fly   225 YALIILRNRL----TGDGQQTPYSLGHCAWFVYGALMKQGSTLSPIADST-RLLFATWWIFITIL 284
            ..|...::..    .|..:...:|........|..|..:.:.:.|....| |.|...|.||....
Zfish   698 LTLYEWKSPFGMTPRGRNRDRVFSFSSALNVCYAILFGRTAAIKPPKCWTGRFLMNLWAIFCLFC 762

  Fly   285 TSFYTANLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYA 349
            .|.|||||.|.:...|   .|..::.|.....|..|.   |..:.  |..||             
Zfish   763 LSTYTANLAAVMVGEK---TYEQLSGIHDPKLHHPSQ---GFRFG--TVRES------------- 806

  Fly   350 VFSDETNDTYNLQNYVEK------------------NGYVFVRDRPAINIMLYRDYLYRKTVSFS 396
                      :.::||:|                  :|...::|.|            :|..:|.
Zfish   807 ----------SAEDYVKKSFPEMHEYMRRYNAPTTPDGIDHLKDDP------------QKLDAFI 849

  Fly   397 DEKVHCPF-AMAKEPFLKKKRTFAYPIG--------SNLSQLFDP-------ELLH-----LVES 440
            .:|....: |.|.:.::....| .|.||        ||:|:|...       ::||     :|..
Zfish   850 MDKALLDYWAHADKXYISLLLT-GYGIGLKQNSPLTSNISELVSQYKSDGFMDMLHDKWYKVVPC 913

  Fly   441 GIVKHLSKRNLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFST---ELMFRYVNS 502
            |      ||:....|           .|:.|....:...::.....||::.:|   .::.|:|..
Zfish   914 G------KRSFAVTE-----------TLQMGIKHFSGLFVMLCVGVALSLLTTLGEHIVHRWVIP 961

  Fly   503 RQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPPPPYQSIFNGGSH 567
            |.:               :|.....||...:||   |..|.......:..|...|.:|...|.:.
Zfish   962 RMQ---------------ESTEHKYWLHTSQRL---HRALNPTFKEDKLQTVAKPEKSCNVGNNQ 1008

  Fly   568 GDPLNRWRRPLANGNALGN 586
            ..|.|....|..|...|.|
Zfish  1009 QMPWNSLGTPNCNRRKLSN 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 85/445 (19%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141
ANF_receptor 132..452 CDD:279440
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 85/442 (19%)
Lig_chan 682..941 CDD:278489 62/320 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591376
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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