DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grik4

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:599 Identity:136/599 - (22%)
Similarity:220/599 - (36%) Gaps:146/599 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 LETINRKKPKLREMLDWIGGKHLRIA----------TLEDFPLSYTEVLENG---TRVGH----- 109
            |..:...:..||::..|...:.|.:.          ||.:..|:.|.:|||.   .|..|     
Zfish   376 LRIMQNSRDGLRQIGQWHSEQGLSMERKLPSLNVTDTLFNTTLTITTILENPYVMLRANHQELEG 440

  Fly   110 -----GVSFQIIDFLKKKFNFTYEVVVPQDNIIGSP---SDFDRSLIEMVNSSTVDLAAAFIPSL 166
                 |....::..|.....|.|.:.:..|.:.|.|   ..:...:.|:: |...|||.|.:...
Zfish   441 NDRYEGFCVDMLKELADILKFKYRIRLVGDGVYGVPGANGTWTGMVGELI-SRKADLAVAALTIT 504

  Fly   167 SDQRSFVYYSTTTLDEGEWIM----VMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYAL 227
            :::...:.:|...:..|..||    :.:||    .....|.||...||:.:|::.|||..:::  
Zfish   505 AEREKVIDFSKPFMTLGISIMYRVHIGRRP----GYFSFLDPFSPGVWLFMLLAYLAVSCVLF-- 563

  Fly   228 IILRNRLTGDGQQTP--------------YSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWW 278
              |..|||......|              ||||:..||..|..|:||||::|.|.|||.:...||
Zfish   564 --LVARLTPYEWYNPHPCLKGRCSLLINQYSLGNSFWFPVGGFMQQGSTIAPRALSTRCVSGVWW 626

  Fly   279 IFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNK-HFVSMRGGGV---------------- 326
            .|..|:.|.|||||.||||:.:..:|..:|:|:..:.. .:.:|.||..                
Zfish   627 AFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTMHGGSTMTFFQNSRYQTYQRMW 691

  Fly   327 --------EYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYVFVRDRPAINIML 383
                    ...:::|.|.::   |::.:|||...:.|.:.|    |.::|               
Zfish   692 NFMYSKQPSVFVKSTEEGIA---RVLNSNYAYLLESTMNEY----YRQRN--------------- 734

  Fly   384 YRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSK 448
                              |...........|......|:||.....||..:|.|.|...::.| |
Zfish   735 ------------------CNLTQIGGLLDTKGYGIGMPLGSVYRDEFDLAILRLQEENRLEIL-K 780

  Fly   449 RNLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEANKWARHG 513
            |.......||::.....:.|...::...:.:::.|.  .:|:|...|.|.::         .|| 
Zfish   781 RKWWDGGKCPKEEDHRAKGLGMENIGGIFVVLVCGL--LVAIFMAVLEFVWM---------LRH- 833

  Fly   514 IGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPPPPYQSIFNGGSHGDPLNRWRRPL 578
               ||..:.......||..:.:......|......|.:|..|.|.           ||:. ||..
Zfish   834 ---TPGTELSVCEEMLRELQGIVLCQDSLQLRRRRGASVLRPQPL-----------PLDE-RRAR 883

  Fly   579 ANGNALGNGVLLGG 592
            |...:|.||.|..|
Zfish   884 AAAASLSNGKLCTG 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 98/422 (23%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556 5/23 (22%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 97/409 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590965
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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