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Protein Alignment Ir76b and Gria1

DIOPT Version :9

Sequence 1:	NP_649176.1	Gene:	Ir76b / 40198	FlyBaseID:	FBgn0036937	Length:	636	Species:	Drosophila melanogaster
Sequence 2:	NP_113796.1	Gene:	Gria1 / 50592	RGDID:	621531	Length:	907	Species:	Rattus norvegicus

Alignment Length:	592	Identity:	126/592 - (21%)
Similarity:	220/592 - (37%)	Gaps:	136/592 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    62 TLETINRKKPKLREMLDW--------------IGGKHLRIATLEDFPLSYTEVLEN--------- 103
            ||..|..|...:|::..|              .||.:   :::::.....|.:||:
  Rat   365 TLHVIEMKHDGIRKIGYWNEDDKFVPAATDAQAGGDN---SSVQNRTYIVTTILEDPYVMLKKNA 426

  Fly   104 ----GTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFDRSLIEMVNS---STVDLAAA 161
                |.....|...::...:.|...::|.:.:..|...|:.....::...||..   ...|:|.|
  Rat   427 NQFEGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVA 491

  Fly   162 FIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASG-SGLLAPFEFWVWILILVSLLAVGPIIY 225
            .:.....:...:.:|...:..|..||: ::|::|..| ...|.|..:.:|:.|:.:.:.|..:::
  Rat   492 PLTITLVREEVIDFSKPFMSLGISIMI-KKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLF 555

  Fly   226 ALIIL-------------RNRLTGDGQQTPYSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATW 277
            .:...             |::.|.| |...:.:.:..||..||.|:||..:||.:.|.|::...|
  Rat   556 LVSRFSPYEWHSEEFEEGRDQTTSD-QSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVW 619

  Fly   278 WIFITILTSFYTANLTAFLTLSKFTLPYNTVNDIL--------------TK-----------NKH 317
            |.|..|:.|.|||||.||||:.:...|..:..|:.              ||           .|.
  Rat   620 WFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKM 684

  Fly   318 FVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYVFVRDRPAINIM 382
            :..|:.......:|||.|.:..: |..:..||...:.|     :..|:|:        |...:.|
  Rat   685 WTYMKSAEPSVFVRTTEEGMIRV-RKSKGKYAYLLEST-----MNEYIEQ--------RKPCDTM 735

  Fly   383 LYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLS 447
                    |.....|.|.:               ..|.|.||.|....:..:|.|.|.|::..|.
  Rat   736 --------KVGGNLDSKGY---------------GIATPKGSALRNPVNLAVLKLNEQGLLDKLK 777

  Fly   448 KRNLPSAEICPQDLGGTERQLRNGDLMMT-----YYIMLAGFATALAVFSTELMFRYVNSRQEAN 507
            .:.......|..  ||.:.:.:...|.::     :||::.|...|:.|...|..::   ||.|:.
  Rat   778 NKWWYDKGECGS--GGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYK---SRSESK 837

  Fly   508 KWARHGIGRTPN---GQSVAPSRWLRGWRRLNSGHGQLLGAST--HGQNVTP--PPPYQSI-FNG 564
            :  ..|....|.   .:::..|...|     |||.|...|..:  :|:.|:.  |...||| ...
  Rat   838 R--MKGFCLIPQQSINEAIRTSTLPR-----NSGAGASGGGGSGENGRVVSQDFPKSMQSIPCMS 895

  Fly   565 GSHGDPL 571
            .|.|.||
  Rat   896 HSSGMPL 902

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.