DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and grid2

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:686 Identity:156/686 - (22%)
Similarity:265/686 - (38%) Gaps:145/686 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 TNLIQMGENGTLSPVTELPMDVDASEAGFDADAPVETLET---INRKKPKL--REMLDWIGGKHL 85
            |:|::..:||: :|  .:..::..:..|.|....|..|.|   |:.....|  |::.:.:.|..|
Zfish   382 TSLLEFNDNGS-NP--NIHFEILGTNYGEDRGRGVSRLATWDPIHGLNGTLTDRKLENNMRGVVL 443

  Fly    86 RIATLEDFPLSYTEVLEN---GTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFD--- 144
            |:.|:.:.|  :..|.||   ..:...|.|..::|.|.....|.||:.|..|:..|| ...|   
Zfish   444 RVVTVLEEP--FVMVSENVLGKPKKYQGFSIDVLDALANYLGFKYEIYVAPDHKYGS-QQADGTW 505

  Fly   145 RSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWV 209
            ..||..:.....|:..:.:....::.|.|.::|..:|....:: :::...:......||||:..:
Zfish   506 NGLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYSVGVL-LRKAERTVDMFACLAPFDLSL 569

  Fly   210 WILILVSLLAVGPIIYALIILRNRLTGDGQQTPYSLGHCAWFVYGALMKQGSTLSPIADSTRLLF 274
            |..|..::|.||.::|.|..|.......|..:..:|.:..|||||:.::||..:.....:||::.
Zfish   570 WACIAGTVLLVGTLVYLLNWLNPPRLPMGSVSSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMM 634

  Fly   275 ATWWIFITILTSFYTANLTAFLTLSKF--------------TLPYNTVNDILTKNKHFVSMRGGG 325
            ..||:|..|:.|.|||||.||||:|:.              .|||.||.|    :..:..:|..|
Zfish   635 GVWWLFALIVISSYTANLAAFLTISRIENSIQSLQDLAKQTDLPYGTVLD----SAVYDQVRSKG 695

  Fly   326 VEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQNYVE--KNG--------YVFVRDRPAIN 380
            :....|  :...|.:.|||           |.|...:|.||  |.|        :.||.|...:.
Zfish   696 MNPFER--DPMYSQMWRMI-----------NRTGGAENNVEESKEGIRKVKYGRFAFVWDAAVLE 747

  Fly   381 IMLYRD---YLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGI 442
            .:...|   .||..:.:.:|.    .:.||.:.            ||....:|...:|.|.::|.
Zfish   748 YVAINDEDCSLYTVSNNVADR----GYGMAMQH------------GSPYRDIFSQRILELQQNGD 796

  Fly   443 VKHLSKRNLPSAEICPQDLGGTERQLRNGDLM------MTYYIMLAGFATALAVFSTELMFRYVN 501
            :..|..:..|....|  ||.......::|..:      ..::::.||...:..:.:.|..     
Zfish   797 MDILKLKWWPRDSPC--DLYSPVGTRKSGSALDIHSFAGVFFVLAAGVVLSCLIATVETW----- 854

  Fly   502 SRQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLN-------SGHGQLLGASTHGQNVTP----- 554
                   |.|....|.|:.:............|:|       |.|.|.   ||...::||     
Zfish   855 -------WTRRKGSRVPSKEDDKEIDLEHLHHRVNSLCTEDESPHKQF---STSSIDLTPLDMDS 909

  Fly   555 -PPPYQSI-----FNGGSH-------GDPLNRWRRPLANGNALG--NGVLLGGDSEGGVRRLING 604
             |...|::     |. .:|       .:.:....|.|:...|.|  .|.:....:.|..|:    
Zfish   910 LPAARQALEQISDFR-NTHITTTTFIPEQIQTLSRSLSAKAAAGFAFGAVQDHRTGGPFRQ---- 969

  Fly   605 RDYMVFRNPNGQSQLVPVRSPSAALFQ------YSY 634
                  |.|||.....||::.|:..:|      :||
Zfish   970 ------RAPNGGFFRSPVKTMSSIPYQPTPAPNFSY 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 97/386 (25%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 11/47 (23%)
ANF_receptor 42..404 CDD:279440 5/24 (21%)
PBP2_iGluR_delta_2 440..806 CDD:270449 101/402 (25%)
Lig_chan 568..841 CDD:278489 75/307 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009 3/11 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591359
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.