DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and GluRIID

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster


Alignment Length:431 Identity:107/431 - (24%)
Similarity:179/431 - (41%) Gaps:74/431 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 SYTEVLENGTRVGHGVSF--QIIDFLKKKFNFTYEVVVPQDNIIGSPSDFDRS------LIEMVN 152
            |...::.|....|:||..  ::.|  |..||||:.   ...|..||   |:::      :::.:.
  Fly   437 SIDTLIGNNQFQGYGVDLIKELAD--KLGFNFTFR---DGGNDYGS---FNKTTNSTSGMLKEIV 493

  Fly   153 SSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSL 217
            ....|||...:...|::...:.:|...::.|..|:.::..:...:....:.||...||:.:.::.
  Fly   494 EGRADLAITDLTITSEREEVIDFSIPFMNLGIAILYVKPQKAPPALFSFMDPFSSEVWLYLGIAY 558

  Fly   218 LAVGPIIYALIILRNRLTGDGQQTPY-------------SLGHCAWFVYGALMKQGSTLSPIADS 269
            |.|....:.:    .||:......||             ::.:..||..|||::|||.::|.|.|
  Fly   559 LGVSLCFFII----GRLSPIEWDNPYPCIEEPEELENQFTINNSLWFTTGALLQQGSEIAPKALS 619

  Fly   270 TRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTN 334
            ||.:.|.||.|..|:.|.|||||.||||:...|.|.|:|.| |..||       ..|:|..:.|.
  Fly   620 TRTISAIWWFFTLIMVSSYTANLAAFLTIENPTSPINSVKD-LADNK-------DDVQYGAKRTG 676

  Fly   335 ESLSMLNRMIQNNYAVFSDETND-----TYNLQNYVEK----NGYVFVRDRPAINIMLYRDYLYR 390
            .:.:..:...:..|...::..|.     ..|.|..|:|    ..|.|:.:..:|.....|:....
  Fly   677 STRNFFSTSEEPIYIKMNEYLNAHPEMLMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLT 741

  Fly   391 KTVSFSDEKVHCPFAMAKE-PFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKR--NLP 452
            |.....|||.: ..||.|. |:..|               |:..||.|.|.|::..|..:  |..
  Fly   742 KVGDPLDEKGY-GIAMVKNWPYRDK---------------FNKALLELQEQGVLARLKNKWWNEV 790

  Fly   453 SAEIC---PQDLGGTERQLRNGDLMMTYYIMLAGFATALAV 490
            .|.:|   ..|.|.:|..:.|  |...|.:::.|...::.:
  Fly   791 GAGVCSAKSDDDGPSELGVDN--LSGIYVVLVIGSIISIII 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 93/371 (25%)
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377
ANF_receptor 46..380 CDD:279440
PBP2_iGluR_Kainate 417..788 CDD:270432 97/386 (25%)
Lig_chan 549..819 CDD:278489 82/299 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462815
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.