DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and Ekar

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster


Alignment Length:561 Identity:106/561 - (18%)
Similarity:193/561 - (34%) Gaps:139/561 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 LETINRKKPKLREMLDWIGGKHLRIATLEDF--------PLSYTEVLE------------NGTRV 107
            |:.|..|:..:.::.:|....||.|.....|        .|....:||            .|...
  Fly   365 LDLIKLKQHSIVKVGEWTPHGHLNITEPSMFFDAGSMNVTLVVITILETPYVMMHYGKNFTGNER 429

  Fly   108 GHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGS--PSDFD-RSLIEMVNSSTVDLAAAFIPSLSDQ 169
            .:|....|::.:.::..|.|.:.:..|...|:  |...: ..::..:.....|||...:.....:
  Fly   430 FYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYAR 494

  Fly   170 RSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILRNRL 234
            .|.:.::...::.|..|:......|.......:.|....:||.:|::...|...||.:       
  Fly   495 ESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIV------- 552

  Fly   235 TGDGQQTP-------------------YSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIF 280
               |:.:|                   :||....||..|..|:|...:.|.|.|||::.:||..|
  Fly   553 ---GKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFF 614

  Fly   281 ITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLSMLNRMIQ 345
            ..|:.:.|||||.||||..:...|.....|:.::.:         :.|....:..:::.      
  Fly   615 SLIIVASYTANLAAFLTTERMINPIENAEDLASQTE---------ISYGTLDSGSTMTF------ 664

  Fly   346 NNYAVFSDETNDTY-----NLQN---------------YVEKNGYVFVRDRPAINIMLYRDYLYR 390
                 |.|...:||     ::.|               .|.:..|.|:.:...::.::.||....
  Fly   665 -----FRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIVQRDCNLT 724

  Fly   391 KTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHL-SKRNLPSA 454
            :.....|.|.:               ..|.|.||.........:|.|.|.|.::.| .|....:.
  Fly   725 QIGGLLDTKGY---------------GIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTD 774

  Fly   455 EICPQDLGGTERQLRNGDLMM-----TYYIMLAGFATALAVFSTELMFRYVNSRQEANKWARHGI 514
            |.|.:.  .|.:|.:...|.:     .:.:::||...|..|...|..:.:           |:..
  Fly   775 ETCTRK--NTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNF-----------RYNY 826

  Fly   515 GRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPP 555
            ..||: |||..:::.:.            |.....:|.|||
  Fly   827 EATPS-QSVVNNKYNQD------------GILESERNYTPP 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 76/415 (18%)
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 5/22 (23%)
ANF_receptor 39..371 CDD:279440 2/5 (40%)
PBP2_iGluR_Kainate 402..771 CDD:270432 77/413 (19%)
Lig_chan 533..807 CDD:278489 64/320 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462922
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.