DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and gria4a

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_999971.1 Gene:gria4a / 407735 ZFINID:ZDB-GENE-020125-7 Length:898 Species:Danio rerio


Alignment Length:522 Identity:114/522 - (21%)
Similarity:209/522 - (40%) Gaps:81/522 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 IATLEDFPLSYTEVLEN-----GTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFDRS 146
            :.|:.:.|  |..:.:|     |.....|....:...:.|.....|::.:..|...|:.....:.
Zfish   413 VTTIMEGP--YVMLKKNWEMYEGNEQFEGYCVDLASEVAKHIGIKYKISIVLDGKYGARDPETKI 475

  Fly   147 LIEMVNS---STVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASG-SGLLAPFEF 207
            ...||..   ...::|.|.:.....:...:.:|...:..|..||: ::|::|..| ...|.|..:
Zfish   476 WNGMVGELVYGKAEIAVAPLAITLVREEVIDFSKPFMSLGISIMI-KKPQKSKPGVFSFLDPLAY 539

  Fly   208 WVWILILVSLLAVGPIIYALIILRNRLT------------GDG---QQTPYSLG--HCAWFVYGA 255
            .:|:.|:.:.:.|..:::    |.:|.:            .||   .|.|...|  :..||..||
Zfish   540 EIWMCIVFAYIGVSVVLF----LVSRFSPYEWHTEEPEEGSDGPPSDQPPNEFGIFNSLWFSLGA 600

  Fly   256 LMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNK-HFV 319
            .|:||...:|.:.|.|::...||.|..|:.|.|||||.||||:.:...|..:..|:..:.: .:.
Zfish   601 FMQQGCDFTPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYG 665

  Fly   320 SMRGGGVEYAIRTTNESL--SMLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYVFVRDRPAINIM 382
            ::..|..:...|.:..::  .|.:.|......||:..|.:.. .:....|..|.|          
Zfish   666 TLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPTVFTKTTAEGV-ARVRKSKGKYAF---------- 719

  Fly   383 LYRDYLYRKTVS-FSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHL 446
                 |...|:: :::::..|...........|....|.|.||.|....:..:|.|.|:|::..|
Zfish   720 -----LLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSQLGTPVNLAVLKLSEAGVLDKL 779

  Fly   447 -SKRNLPSAEICPQDLGGTERQ---LRNGDLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEAN 507
             :|......|..|:|.|..::.   |...::...:||::.|...|:.|...|..::   ||.||.
Zfish   780 KNKWWYDKGECGPKDSGSKDKSSQALSLSNVAGVFYILVGGLGLAMLVALVEFCYK---SRAEAK 841

  Fly   508 KWARHGIGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGA-STHGQNVTPPPPYQSIFNGGS--HGD 569
            |            ..:..|..:|...||:     :.|: ..:|:.:||..| :::.:|.|  ||.
Zfish   842 K------------LKLTFSEAMRNKARLS-----ITGSLGENGRVLTPDCP-KAVHSGPSYRHGP 888

  Fly   570 PL 571
            .|
Zfish   889 AL 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 79/379 (21%)
gria4aNP_999971.1 PBP1_iGluR_AMPA_GluR4 23..393 CDD:107383
ANF_receptor 34..375 CDD:279440
PBP2_iGluR_AMPA_GluR4 408..790 CDD:270445 84/399 (21%)
Lig_chan 540..821 CDD:278489 68/300 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591370
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

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