DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and Nmdar1

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster


Alignment Length:725 Identity:156/725 - (21%)
Similarity:253/725 - (34%) Gaps:203/725 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NDSPPTNLIQMGENGTLSPVTELPMDVDASEAGFDADAPVETLETINRK-----------KPKLR 74
            |.:..|..:...:||            |...||:|    |..:....:|           :.|:|
  Fly   345 NITGETGQVAFDDNG------------DRIYAGYD----VINIREQQKKHVVGKFSYDSMRAKMR 393

  Fly    75 EMLD-----WIGGK-----------HLRIATLEDFPLSYTEVLENGTRVG--------------- 108
            ..::     |.|.:           |||:.|:|:.|..|..      |:|               
  Fly   394 MRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVR------RMGDDEFRCEPDERPCPL 452

  Fly   109 -------------HGVSFQIIDFLKKKFNFTYEVVVPQDNIIGS------------PSDFDRSLI 148
                         .|....::..|.|:.||||::.:..|...|.            ..::...:.
  Fly   453 FNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIG 517

  Fly   149 EMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILI 213
            |:|| ...|:..|.:....::..::.:|.....:|..|: .::|..|::....|.||...:|||:
  Fly   518 ELVN-ERADMIVAPLTINPERAEYIEFSKPFKYQGITIL-EKKPSRSSTLVSFLQPFSNTLWILV 580

  Fly   214 LVSLLAVGPIIYALIILRNRLTGDG----------QQTPYSLGHCAWFVYGALMKQG-STLSPIA 267
            :||:..|..::|.|    :|.:..|          ::...:|....||.:|.|:..| ...:|.:
  Fly   581 MVSVHVVALVLYLL----DRFSPFGRFKLSHSDSNEEKALNLSSAVWFAWGVLLNSGIGEGTPRS 641

  Fly   268 DSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNK----HFVSMRGGGVEY 328
            .|.|:|...|..|..|:.:.|||||.|||.|.:.....:.:||...:|.    ...:::|..|:.
  Fly   642 FSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLTCATVKGSSVDM 706

  Fly   329 AIRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQNYVEKNG--YVFVRDRPAINIMLYRDYLYRK 391
            ..|...|..:|...|..||||.......|.        |.|  ..|:.|...:.....:|     
  Fly   707 YFRRQVELSNMYRTMEANNYATAEQAIQDV--------KKGKLMAFIWDSSRLEYEASKD----- 758

  Fly   392 TVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSK-------- 448
                      |....|.|.|.:.........||..:......:|...|||.::.|.|        
  Fly   759 ----------CELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHV 813

  Fly   449 -RNLPSAEICPQDLGGTERQLRNGDLMMTYYIML-AGFATALAVFSTELMF---------RYVNS 502
             :|....|..|..||     |:|   |...:|:: .|.|..:.:...|:::         |...:
  Fly   814 QQNCELFEKTPNTLG-----LKN---MAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQKRLDIA 870

  Fly   503 RQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTH-----------------GQ 550
            |..|:||.    |.....:::..|  |...|:.|.|..     |||                 ||
  Fly   871 RHAADKWR----GTIEKRKTIRAS--LAMQRQYNVGLN-----STHAPGTISLAVDKRRYPRLGQ 924

  Fly   551 NVTPPPPYQSIFNGGSHGDPLNRWRRPLANGNALGNGVLLGGDSEGGVRRLINGRDYMVFRNPNG 615
            .:.|...:.     |...|.| |.|||...||. |....:...::.|:...:.|:     ..|. 
  Fly   925 RLGPERAWP-----GDAADVL-RIRRPYELGNP-GQSPKVMAANQPGMPMPMLGK-----TRPQ- 976

  Fly   616 QSQLVPVRSP 625
            ||.|.|..||
  Fly   977 QSVLPPRYSP 986

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 89/421 (21%)
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 13/75 (17%)
ANF_receptor 58..371 CDD:279440 9/41 (22%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 95/435 (22%)
HisJ 451..>558 CDD:223904 17/108 (16%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 33/140 (24%)
Lig_chan 575..838 CDD:278489 71/297 (24%)
CaM_bdg_C0 854..882 CDD:287524 6/31 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462914
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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