DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and GluRIIB

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster


Alignment Length:497 Identity:109/497 - (21%)
Similarity:185/497 - (37%) Gaps:143/497 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 KHLRIATLEDF---PLSYTEVLENGTRVG----------HGVSFQ--------IIDFL-----KK 121
            |..|:...|||   |:.||.    .||||          .||.::        .:|.:     :.
  Fly   407 KQKRLQNKEDFSQKPIRYTV----ATRVGKPYFSWREEPEGVHYEGNERFEGYAVDLIYMLAQEC 467

  Fly   122 KFNFTYEVVVPQDNIIGS----PSDFD---RSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTT 179
            ||:|.:|.|  :||..||    ..::|   |.||:  |::.:.:....|...  :||.|.::...
  Fly   468 KFDFNFEPV--RDNKYGSYDANTDEWDGIIRQLID--NNAQIGICDLTITQA--RRSVVDFTVPF 526

  Fly   180 LDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALII------------LRN 232
            :..|..|:..:.|...|.....|.|:...||:.::::::...   :|||.            :.|
  Fly   527 MQLGISILSYKEPPPKADIYAFLNPYNAEVWLFVMIAMMITA---FALIFTGRIDQYEWDQPVEN 588

  Fly   233 RLTGDGQQTPYSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLT 297
            ......:|..:.|.:..|.|.|:::.||..|.|.....|||.|.||||..:::..|.|.|.||:|
  Fly   589 VNREMERQNIWHLSNALWLVLGSMLNQGCDLLPRGLPMRLLTAFWWIFALLISQTYIAKLAAFIT 653

  Fly   298 LSKFTLPYNTVNDILTKNK-HFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDET------ 355
            .||......:::|::.:|| .|.::|||........:|::   .|||..|....|..:.      
  Fly   654 SSKIAGDIGSLHDLVDQNKVQFGTIRGGATSVYFSESNDT---DNRMAWNKMLSFKPDAFTKNNE 715

  Fly   356 ----------------NDTYNLQNYVEKNGYVFVRDRPAINIMLYRDYLYRKTVSFSDEKVHCPF 404
                            .:|.|||.||::|                                 |..
  Fly   716 EGVDRVKLSKGTYAFLMETTNLQYYVQRN---------------------------------CEL 747

  Fly   405 AMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKR-----------NLPSAEICP 458
            ....|.|.:|....|.|:.::........:|.|.|.|.:..|..:           |:|:.:...
  Fly   748 TQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNSNESTCDSNVPTIDDGQ 812

  Fly   459 QDL---GGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMF 497
            .|:   ||            .:.:::.|....|.:...|.::
  Fly   813 FDMDSVGG------------LFVVLIVGVVVGLVIGVAEFLW 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 97/421 (23%)
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377
ANF_receptor 41..378 CDD:279440
PBP2_iGluR_Kainate 422..795 CDD:270432 95/421 (23%)
Lig_chan 555..822 CDD:278489 67/317 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462606
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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