DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and GluRIIC

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:615 Identity:129/615 - (20%)
Similarity:218/615 - (35%) Gaps:141/615 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 GENGTLSPVTELPMDVDASEAGFDADA-------------PVETLETINRKKPKLREMLDWIGGK 83
            |.|.|....:.|..|.|.....|:.:.             |...:..:|......::|:      
  Fly   364 GVNNTNFRTSILQFDEDGQRITFNIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMI------ 422

  Fly    84 HLRIATLEDFP-LSYTEVLE----NGTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIG----S 139
             .|:||....| .||.|...    .|..:..|.:..:||.:.:...|.|..|...|...|    .
  Fly   423 -YRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKE 486

  Fly   140 PSDFDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAP 204
            ...::..:.|::|:. ..:....:.....:::.|.::...:..|..|:..:.|....:....|||
  Fly   487 TKQWNGIIGEIINND-AHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAP 550

  Fly   205 F--EFWVWILILVSLLAVGPIIYALI----------------ILRNRLTGDGQQTPYSLGHCAWF 251
            |  |.|:||||.|.::.....|.|.|                :|.|:         :.:.:..|.
  Fly   551 FGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQ---------WRIHNTGWL 606

  Fly   252 VYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNK 316
            ...::|..|..:.|.:...|:..||||||..|:.:.|||||.||||.||.......:.|:..:.|
  Fly   607 TVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKK 671

  Fly   317 -HFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDE----TNDTYNLQNYVEKN--GYVFVR 374
             .|.::.||.....:..:||::..|...:.||     |:    |.|.....:.|.||  .|:|:.
  Fly   672 VKFGTIYGGSTYNLLADSNETVYRLAFNLMNN-----DDPSAYTKDNLEGVDRVRKNRGDYMFLM 731

  Fly   375 DRPAINIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVE 439
            :              ..|:.:..|: :|......|.|.:|....|.|.|:.........:|.|.|
  Fly   732 E--------------TTTLEYHREQ-NCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSE 781

  Fly   440 SGIVKHLSKR----------NLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTE 494
            .|.:..|.::          ..|..:..| |:  |..:||.     .:|.:.||...|..:..||
  Fly   782 RGELYDLKQKWWKNPNASCFEEPDPDATP-DM--TFEELRG-----IFYTLYAGILIAFLIGITE 838

  Fly   495 LM---------------------FRYV----NSRQ-------------EANKWARHGIGRTP-NG 520
            .:                     .|:|    |:|:             ...:.....:.||| :.
  Fly   839 FLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKPIVAGTPISSVRTTPRRSLDKSLDRTPKSS 903

  Fly   521 QSVAPSRWLRGWRRLNSGHGQLLGASTHGQ 550
            :.|...|.....|.:..|.|...|::..|:
  Fly   904 RRVVIGRSSEEMREMAQGSGSSSGSNNAGR 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 89/387 (23%)
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 7/39 (18%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141
PBP2_iGluR_Kainate 423..794 CDD:270432 93/400 (23%)
Lig_chan 554..828 CDD:278489 75/310 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462612
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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