DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and GRIN2C

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_016880033.1 Gene:GRIN2C / 2905 HGNCID:4587 Length:1337 Species:Homo sapiens


Alignment Length:606 Identity:119/606 - (19%)
Similarity:211/606 - (34%) Gaps:162/606 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GTLSP-----------VTELPMDVDASEAGFDADAPVETLETINRKKPKLREMLD---------- 78
            |.:||           ||....|...|..|:... |...:..:||.  :|.||:.          
Human   397 GPVSPAREAFYRHLLNVTWEGRDFSFSPGGYLVQ-PTMVVIALNRH--RLWEMVGRWEHGVLYMK 458

  Fly    79 ---W----------IGGKHLRIATLEDFPLSYTEVLENGT------------RVGH--------- 109
               |          :..:||.:||||:.|....|..:.||            :..|         
Human   459 YPVWPRYSASLQPVVDSRHLTVATLEERPFVIVESPDPGTGGCVPNTVPCRRQSNHTFSSGDVAP 523

  Fly   110 -------GVSFQIIDFLKKKFNFTYEVVVPQDNIIGS-PSDFDRSLIEMVNSSTVDLAAAFIPSL 166
                   |....|:..|.:...|:|::.:..:...|. .......:|..|.....|:|...: ::
Human   524 YTKLCCKGFCIDILKKLARVVKFSYDLYLVTNGKHGKRVRGVWNGMIGEVYYKRADMAIGSL-TI 587

  Fly   167 SDQRS-FVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAV---------- 220
            :::|| .|.:|...::.|..:|| .|...:.|.|..|.|:...||:::.|..|.|          
Human   588 NEERSEIVDFSVPFVETGISVMV-ARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFMFEY 651

  Fly   221 -GPIIYALIILRNRLTGDGQQTPYSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITI 283
             .|:.|...:.|.:.:|.   ..:::|...|.::..:......: :|...:::::...|..|..|
Human   652 FSPVSYNQNLTRGKKSGG---PAFTIGKSVWLLWALVFNNSVPIENPRGTTSKIMVLVWAFFAVI 713

  Fly   284 LTSFYTANLTAFLTLSKFTLPYNTVNDILTKNK-------------------------------H 317
            ..:.|||||.||:...::   .:||:.:..|..                               .
Human   714 FLASYTANLAAFMIQEQY---IDTVSGLSDKKSLHLENTGVAWTAFKTFCSDYFQRPQDQYPPFR 775

  Fly   318 FVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTY--NLQNYVEKNGYVFVRDRPAIN 380
            |.::..|..|..||:...  .|...|::.|.....|......  :....|.:....|:.|...:|
Human   776 FGTVPNGSTERNIRSNYR--DMHTHMVKFNQRSVEDALTSLKMGSEAQPVPRKLDAFIYDAAVLN 838

  Fly   381 IMLYRDYLYRKTVSFSDEKVHCP----FAMAKEPFLKKKRTFAYP--IGSNLSQLFDPELLHLVE 439
            .|..:|. ..|.|:....||...    .||.|:...|:....|..  :|...:|..:...|    
Human   839 YMAGKDE-GCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQKLETVWL---- 898

  Fly   440 SGIVKHLSKRNLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTE-LMFRYVNSR 503
            |||.:: .|..:.|:::...::.|            .:|::|.....||.||:.| |::      
Human   899 SGICQN-EKNEVMSSKLDIDNMAG------------VFYMLLVAMGLALLVFAWEHLVY------ 944

  Fly   504 QEANKW-ARHGIGRTPNGQSV 523
                 | .||.:   ||...:
Human   945 -----WKLRHSV---PNSSQL 957

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 85/434 (20%)
GRIN2CXP_016880033.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156003
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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