DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and GRIN2B

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_000825.2 Gene:GRIN2B / 2904 HGNCID:4586 Length:1484 Species:Homo sapiens


Alignment Length:503 Identity:120/503 - (23%)
Similarity:196/503 - (38%) Gaps:126/503 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 RKKPKLREMLDWIGGKHLRIATLEDFPLSYTEVLE--NGTRVGHGVSFQ---------------- 114
            |..|:..|..|    .||.|.|||:.|....|.::  :||.:.:.|..|                
Human   393 RMCPETEEQED----DHLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKRIVTENKTDEEPGYI 453

  Fly   115 -------IIDFLK---KKFNFTYEVVVPQDNIIGSPSDFDRSLIEMVNSSTVDLAAAFIPSL--S 167
                   .||.||   |...|||::.:..:...|  ...:.:...|:....:..|...:.||  :
Human   454 KKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHG--KKINGTWNGMIGEVVMKRAYMAVGSLTIN 516

  Fly   168 DQRS-FVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILR 231
            ::|| .|.:|...::.|..:|| .|...:.|.|..|.||...||:::.|.||.|..:  |:.:..
Human   517 EERSEVVDFSVPFIETGISVMV-SRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAV--AVFVFE 578

  Fly   232 -------NRLTGDGQQ---TPYSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITILT 285
                   ||...||::   ..:::|...|.::|.:......: :|...:::::.:.|..|..|..
Human   579 YFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFL 643

  Fly   286 SFYTANLTAF------------LTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLS 338
            :.|||||.||            |:..||..|    || .:....|.::..|..|           
Human   644 ASYTANLAAFMIQEEYVDQVSGLSDKKFQRP----ND-FSPPFRFGTVPNGSTE----------- 692

  Fly   339 MLNRMIQNNYA---VFSDETNDTYNLQNYVE------KNGYV--FVRDRPAINIMLYRDYLYRKT 392
               |.|:||||   .:..:.|     |..|:      |.|.:  |:.|...:|.|..||. ..|.
Human   693 ---RNIRNNYAEMHAYMGKFN-----QRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDE-GCKL 748

  Fly   393 VSFSDEKVHCP----FAMAKEPFLKKKRTFAYPIGSNLSQLFD----PELLHLVESGIVKHLSKR 449
            |:....||...    .|:.|:...|::...|      :.|||.    .||..|..:||. |..|.
Human   749 VTIGSGKVFASTGYGIAIQKDSGWKRQVDLA------ILQLFGDGEMEELEALWLTGIC-HNEKN 806

  Fly   450 NLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMF 497
            .:.|:::...::.|            .:|::.|..|.:|..|..|.:|
Human   807 EVMSSQLDIDNMAG------------VFYMLGAAMALSLITFICEHLF 842

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 102/426 (24%)
GRIN2BNP_000825.2 PBP1_iGluR_NMDA_NR2 33..393 CDD:107373 120/503 (24%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 106/440 (24%)
HisJ <459..>542 CDD:223904 21/85 (25%)
Lig_chan 557..829 CDD:278489 73/317 (23%)
Pore-forming. /evidence=ECO:0000250|UniProtKB:A7XY94 604..623 2/18 (11%)