DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and GRIK3

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_000822.2 Gene:GRIK3 / 2899 HGNCID:4581 Length:919 Species:Homo sapiens


Alignment Length:541 Identity:109/541 - (20%)
Similarity:204/541 - (37%) Gaps:151/541 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 NGTLSPVTELPMD-VDASEAGFD---ADAPVETLETINRKKPKLREMLDWIGGKHLRIATLEDFP 94
            |.|....|:..:| :...|.|.:   ..:|.:.|......|.:...:.|.:..:.|.:.|:.:.|
Human   381 NKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTNRSLIVTTVLEEP 445

  Fly    95 LSYTEVLENGTRVGHGVS-FQ--IIDFLKKK---FNFTYEVVVPQDNIIGSPSDFDR--SLIEMV 151
            .   .:.....|..:|.. |:  .||.||:.   ..|:||:.:.:|...|:..|..:  .:::.:
Human   446 F---VMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKEL 507

  Fly   152 NSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVS 216
            .....|||.|.:.....:...:.:|...:..|..|:..:....:.|....|.|....:|:.:|::
Human   508 IDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLLA 572

  Fly   217 LLAVGPIIYALI------------------ILRNRLTGDGQQTPYSLGHCAWFVYGALMKQGSTL 263
            .|.|..:::.:.                  ::.|..|         |.:..||..|:||:|||.|
Human   573 YLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVENNFT---------LLNSFWFGMGSLMQQGSEL 628

  Fly   264 SPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEY 328
            .|.|.|||::...||.|..|:.|.|||||.||||:.:...|.::.:|:..:.|         :||
Human   629 MPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTK---------IEY 684

  Fly   329 -AIR-------------TTNESL-----SMLNRMIQNN-----------YAVFSDETNDTYNLQ- 362
             |::             :|.|.:     |..:.:::||           ||:..:.|...|..| 
Human   685 GAVKDGATMTFFKKSKISTFEKMWAFMSSKPSALVKNNEEGIQRALTADYALLMESTTIEYVTQR 749

  Fly   363 --------NYVEKNGYVF-------VRDRPAINIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFL 412
                    ..::..||..       .||:..|.|:..::          ::|:|    :.||.:.
Human   750 NCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQE----------EDKLH----IMKEKWW 800

  Fly   413 KKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKRNLPSAEICPQDLGGTERQLRNGDLMMTY 477
            :         ||..     ||              :.|..::.:..|.:||            .:
Human   801 R---------GSGC-----PE--------------EENKEASALGIQKIGG------------IF 825

  Fly   478 YIMLAGFATALAVFSTELMFR 498
            .::.||...::.|...|.:::
Human   826 IVLAAGLVLSVLVAVGEFVYK 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 23/116 (20%)
Lig_chan 209..458 CDD:459656 66/312 (21%)
GRIK3NP_000822.2 PBP1_iGluR_Kainate 37..417 CDD:380605 8/35 (23%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 87/402 (22%)

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