DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and Grik4

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:513 Identity:125/513 - (24%)
Similarity:201/513 - (39%) Gaps:87/513 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 LSYTEVLEN-------------GTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFDRS 146
            |..|.:|||             |.....|....::..|.:...|.|::.:..|.:.|.| :.:.:
  Rat   418 LVVTTILENPYLMLKGNHQDMEGNDRYEGFCVDMLKELAEILRFNYKIRLVGDGVYGVP-EANGT 481

  Fly   147 LIEMVN---SSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFW 208
            ...||.   :...|||.|.:...:::...:.:|...:..|..|:..............|.||...
  Rat   482 WTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRRPGYFSFLDPFSPG 546

  Fly   209 VWILILVSLLAVGPIIYALIILRNRLTGDGQQTP--------------YSLGHCAWFVYGALMKQ 259
            ||:.:|::.|||..:::    |..|||.....:|              ||||:..||..|..|:|
  Rat   547 VWLFMLLAYLAVSCVLF----LVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQ 607

  Fly   260 GSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGG 324
            |||::|.|.|||.:...||.|..|:.|.|||||.||||:.:..:|..:|:|:..:.         
  Rat   608 GSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQT--------- 663

  Fly   325 GVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTY-NLQNYV-EKNGYVFVRD-RPAINIMLYRD 386
            .:||.  |.:...||         ..|.:....|| .:.||: .|...|||:. ...|..:|..:
  Rat   664 AIEYG--TIHGGSSM---------TFFQNSRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVLNSN 717

  Fly   387 Y--LYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKR 449
            |  |...|::....:.:|...........|......|:||.....||..:|.|.|:..::.| ||
  Rat   718 YAFLLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEIL-KR 781

  Fly   450 NLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEANKWA---- 510
            .......||::.....:.|...::...:.:::.|.  .:|:|...|.|.:.....||::.:    
  Rat   782 KWWEGGKCPKEEDHRAKGLGMENIGGIFVVLICGL--IVAIFMAMLEFLWTLRHSEASEVSVCQE 844

  Fly   511 ------------------RHGIGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQ 550
                              |...|..|....|...|..||...|:  :|:|.||....|
  Rat   845 MMTELRSIILCQDNIHPRRRRSGGLPPQPPVLEERRPRGTATLS--NGKLCGAGEPDQ 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 97/376 (26%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:415822
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 102/392 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349671
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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