DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and glr-5

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_505244.1 Gene:glr-5 / 179251 WormBaseID:WBGene00001616 Length:932 Species:Caenorhabditis elegans


Alignment Length:494 Identity:104/494 - (21%)
Similarity:170/494 - (34%) Gaps:156/494 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PLNDSPPTNLIQMGENGTLSPV--TELPMDVDASEAGFDADAPVE-TLETINRKKPKLREMLDWI 80
            ||..:....:..:|.:|.|..:  .|...:|..:.:| |:.|.:: .::..:..||         
 Worm   383 PLKSNFSMRIQLLGYSGRLDDIGFWEPATNVHVNMSG-DSKAQLQRNVQVSDELKP--------- 437

  Fly    81 GGKHLRIATLEDFPLSYTEVLENGTRVGHGVSFQ--IIDF---LKKKFNFTYEVVVPQDNIIGSP 140
               |.|:.|:.:.|  |..:.:|...:.....|:  .||.   |.|...|||.:...:|...|:.
 Worm   438 ---HFRVTTIMERP--YVMLKKNHYELDANSKFEGFCIDLLAELSKDLGFTYTIHAVKDGKYGND 497

  Fly   141 ----SDFDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGL 201
                ..:|..:.|::... .::|.|.:.....:...|.::...|..|..|:......:.......
 Worm   498 KYGNGSWDGMMGEILRGE-AEMAVAPLTVNYRRSEAVDFTKPFLSLGISILYKVPDDQQPDLFSF 561

  Fly   202 LAPFEFWVWILILVSLLAVGPIIY---------------------------------ALIILRNR 233
            |.|..:.:|..|..|::.|...:|                                 |.|::.|.
 Worm   562 LNPLSWQIWTAIATSIITVTLGMYFVANVTPYEWNLNFSCCTAHEPHPAAAFATNQEAPIVMSNN 626

  Fly   234 LTGDGQQTPYSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTL 298
                     ||..:..|:|...::|.|....|.|.|||||..|||:|..::.|.|||||.|.||:
 Worm   627 ---------YSFWNTVWYVLSTMLKGGCDFGPRAVSTRLLGGTWWVFYLVIISAYTANLAAVLTV 682

  Fly   299 SKFTLPYNTVNDILT---------------------------------KNKH-FVSMRGGGVEYA 329
            |:..:|...::|:..                                 |:|. ||:..|.|||.|
 Worm   683 SRPYIPIKNLDDLANQTTISYGTIRGGSTMQFFQESRIAAHVKMWQYMKDKDVFVTSNGKGVERA 747

  Fly   330 IRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQ---------NYVEKNGYVFV-------RDRPA 378
                   |||       |||...:.|:..|..|         ..:...||...       .||.:
 Worm   748 -------LSM-------NYAYLMESTSLEYETQQNCNLTQIGGVLGSKGYGIALAKKSEWTDRIS 798

  Fly   379 INIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRT 417
            ..|:||                      ||...::.|:|
 Worm   799 RQILLY----------------------AKRGIIEMKKT 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 92/427 (22%)
glr-5NP_505244.1 PBP1_iGluR_delta_like 26..418 CDD:107376 7/34 (21%)
ANF_receptor 38..377 CDD:279440
PBP2_iGluR_Kainate 438..819 CDD:270432 92/426 (22%)
Lig_chan 568..855 CDD:278489 66/293 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.