DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and glr-2

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001021114.1 Gene:glr-2 / 175999 WormBaseID:WBGene00001613 Length:977 Species:Caenorhabditis elegans


Alignment Length:517 Identity:118/517 - (22%)
Similarity:185/517 - (35%) Gaps:135/517 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 GVSFQIIDFLKKKF-NFTYEVVVPQDNIIGS---PSDFDRSLIEMVNSSTVDLAAAFIPSLSDQR 170
            |....:::.|.|.. .|.|:|.:...|..||   ...:| .:|..:.:.|.|:|.|.:....::.
 Worm   520 GYCIDLLNLLAKNITGFEYDVFISDGNKYGSRQADGSWD-GMIGYLLNETADVAVAPLTITQERE 583

  Fly   171 SFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIY---------- 225
            ..|.:|...:..|..||:.:..::..:....:.|....:||..|.|...|...|:          
 Worm   584 RAVDFSKPFMTTGISIMIKKPEKQEFNIFSFMEPLGMTIWIFTLSSYFGVSLTIFLVSWFSPYEK 648

  Fly   226 ALIILRNRLTGDGQQTPYSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTA 290
            .:...|...|...:.|.|   :..||...|.|:||:.:.|.|.|.|:..:.||.|..|:.|.|||
 Worm   649 RIEFKRGEFTVTNEFTLY---NSLWFTLAAFMQQGTDILPRAVSGRIASSCWWFFTLIIVSSYTA 710

  Fly   291 NLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGGGV-----------------EYAIRTTNESLS 338
            ||.|||||.:.|.|..:|.|:..:||....:..||.                 .:.:.||.:.:.
 Worm   711 NLAAFLTLERMTPPIESVEDLANQNKILYGVNEGGSTAAFFEDSIVPLYKKMWNFMVSTTQKQIE 775

  Fly   339 MLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYVFVRDRPAINIMLYRDYLYRKTVSFSD--EKVH 401
            :..:.|          ||.|.|         .:||.                   |::|  |||.
 Worm   776 LEKQSI----------TNSTSN---------RIFVS-------------------SYADGIEKVR 802

  Fly   402 CPFAMAKEPFLKKKRTFAY----------PIGSNLSQL---------------FDPELLHLVESG 441
            .  :..|..||.::.|..|          .:|.||:.|               .:..:|:|.|.|
 Worm   803 T--SKGKYAFLLEETTNNYESGRRPCDTMKVGQNLNTLGYGIATKIGNPLRVSLNLAILYLSEKG 865

  Fly   442 IVKHLSKRNLPSAEICPQDL--GGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFR--YVNS 502
            .:|.|..:.......|....  |||...|....:...:||:|||...::.....|.:||  ..|.
 Worm   866 ELKKLENKWWYDRGQCDTGTSDGGTSSSLNLSKVAGIFYILLAGMVLSMCTALVEFLFRKNKENR 930

  Fly   503 RQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLNSG---------HGQLLGASTHGQNVTPP 555
            .:|.|:                    :|..|.|..|         ..||....|..:.|:.|
 Worm   931 EKERNR--------------------MRSSRPLKPGILASCERAKQKQLQNRRTKSEEVSTP 972

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 88/384 (23%)
glr-2NP_001021114.1 Periplasmic_Binding_Protein_Type_1 7..453 CDD:299141
Periplasmic_Binding_Protein_Type_2 491..875 CDD:304360 93/398 (23%)
Lig_chan 621..910 CDD:278489 81/331 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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