DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and Grin3b

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:671 Identity:138/671 - (20%)
Similarity:219/671 - (32%) Gaps:231/671 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 MDVDASEAGFDADAPVETLETINRKKPKLREMLDWIGGKHLRIATLEDFPLSYTE---------- 99
            :|.....|.....:|..|     :.:||            ||:.||.:.|..:|.          
Mouse   474 LDFQPGAAALRVPSPSGT-----QARPK------------LRVVTLVEHPFVFTRESDEDGQCPA 521

  Fly   100 --------------------VLENGT------RVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIG 138
                                .||||:      |..:|....:::.|.:...|.:|:.:..|...|
Mouse   522 GQLCLDPGTNDSARLDALFTALENGSVPRTLRRCCYGYCIDLLERLAEDLAFDFELYIVGDGKYG 586

  Fly   139 SPSDFD-RSLIEMVNSSTVDLAAAFIPSLSDQRSFV------YYSTTTLDEGEWIMVMQRPRESA 196
            :..|.. ..|:..:.:....:|.... |::..||.|      ::||:       :.:|.|.|::|
Mouse   587 ALRDGRWTGLVGDLLAGRAHMAVTSF-SINSARSQVVDFTSPFFSTS-------LGIMVRTRDTA 643

  Fly   197 SGSG-LLAPFEFWVWILILVSLLAVGPIIYALIIL--------------RNRLTGDGQQTPYS-- 244
            |..| .:.|..:.:|:.:..:|     .:.||.:.              |||    |....||  
Mouse   644 SPIGAFMWPLHWSMWVGVFAAL-----HLTALFLTLYEWRSPYGLTPRGRNR----GTVFSYSSA 699

  Fly   245 LGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVN 309
            |..|...::|..:   |:.:|...:.|.|...|.||..::.|.|||||.|.:...|.....:.::
Mouse   700 LNLCYAILFGRTV---SSKTPKCPTGRFLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIH 761

  Fly   310 DILTKNKH----------------------FVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFS 352
            |  .|..|                      |..|......::..||...::||            
Mouse   762 D--PKLHHPSQGFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTPHGVAML------------ 812

  Fly   353 DETNDTYNLQNYVEKNGYVFVRDRPAINIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRT 417
              |:|...|.        .|:.|:..:      ||    .||...:   |......:||..:   
Mouse   813 --TSDPPKLN--------AFIMDKSLL------DY----EVSIDAD---CKLLTVGKPFAIE--- 851

  Fly   418 FAYPIG--------SNLSQLFDPELLHLVESGIVKHLSK---RNLPSAEICPQDLGGTERQLRNG 471
             .|.||        ||||:.    :.....||.:..|..   :.:|    |.:.:......|:.|
Mouse   852 -GYGIGLPQNSPLTSNLSEF----ISRYKSSGFIDLLHDKWYKMVP----CGKRVFAVTETLQMG 907

  Fly   472 --DLMMTYYIMLAGFATALAV-FSTELMFRYVNSR-QEANK---W-------ARHGIGR------ 516
              .|...:.::..|..:||.. ....:.:|.|..| :..||   |       .:..:||      
Mouse   908 VYHLSGLFVLLCLGLGSALLTSLGEHVFYRLVLPRIRRGNKLQYWLHTSQVRRQDKVGRGGGHLR 972

  Fly   517 -TPNGQSV----APSRWLRGWR----------RLNSGHGQLLGASTHG-------QNVTPPPPYQ 559
             .|...||    .||...|..|          ::.:|.|   ||...|       |.|.|||...
Mouse   973 SLPKHLSVPLEDPPSPQHRATRGATGEGRAGVQVTTGRG---GAGQSGVPGLASRQAVLPPPLRP 1034

  Fly   560 SIFNGGSHGDP----LNRWRR 576
            |   |.....|    ..||||
Mouse  1035 S---GPKEEQPAADGAGRWRR 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 89/443 (20%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600 1/6 (17%)
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 94/470 (20%)
Lig_chan 656..922 CDD:365843 64/326 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846431
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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